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Much theoretical work has described the ability of transformers to represent formal languages. However, linking theoretical results to empirical performance is not straightforward due to the complex interplay between the architecture, the…

Computation and Language · Computer Science 2024-10-07 Anej Svete , Nadav Borenstein , Mike Zhou , Isabelle Augenstein , Ryan Cotterell

Large language models (LLMs) have demonstrated remarkable success across a wide range of tasks; however, they still encounter challenges in reasoning tasks that require understanding and inferring relationships between distinct pieces of…

Computation and Language · Computer Science 2025-01-15 Haoyu Han , Yaochen Xie , Hui Liu , Xianfeng Tang , Sreyashi Nag , William Headden , Hui Liu , Yang Li , Chen Luo , Shuiwang Ji , Qi He , Jiliang Tang

Large Reasoning Models (LRMs) have advanced rapidly; however, existing benchmarks in mathematics, code, and common-sense reasoning remain limited. They lack long-context evaluation, offer insufficient challenge, and provide answers that are…

Artificial Intelligence · Computer Science 2026-02-09 Qifan Zhang , Jianhao Ruan , Aochuan Chen , Kang Zeng , Nuo Chen , Jing Tang , Jia Li

We establish connections between the Transformer architecture, originally introduced for natural language processing, and Graph Neural Networks (GNNs) for representation learning on graphs. We show how Transformers can be viewed as message…

Machine Learning · Computer Science 2025-06-30 Chaitanya K. Joshi

Transformers have recently emerged as powerful neural networks for graph learning, showcasing state-of-the-art performance on several graph property prediction tasks. However, these results have been limited to small-scale graphs, where the…

Machine Learning · Computer Science 2023-12-19 Vijay Prakash Dwivedi , Yozen Liu , Anh Tuan Luu , Xavier Bresson , Neil Shah , Tong Zhao

Graph Chain-of-Thought (Graph-CoT) enables large language models (LLMs) to perform step-by-step reasoning over graph-structured knowledge, but existing pipelines suffer from low accuracy, excessive token usage, high latency, and low…

Integrating large language models (LLMs) with knowledge graphs derived from domain-specific data represents an important advancement towards more powerful and factual reasoning. As these models grow more capable, it is crucial to enable…

Artificial Intelligence · Computer Science 2024-04-19 Stefan Dernbach , Khushbu Agarwal , Alejandro Zuniga , Michael Henry , Sutanay Choudhury

Graph neural networks (GNNs) have limited expressive power, failing to represent many graph classes correctly. While more expressive graph representation learning (GRL) alternatives can distinguish some of these classes, they are…

Machine Learning · Computer Science 2021-12-08 Leonardo Cotta , Christopher Morris , Bruno Ribeiro

Benchmarking the capabilities and limitations of large language models (LLMs) in graph-related tasks is becoming an increasingly popular and crucial area of research. Recent studies have shown that LLMs exhibit a preliminary ability to…

Machine Learning · Computer Science 2025-04-22 Xinnan Dai , Haohao Qu , Yifen Shen , Bohang Zhang , Qihao Wen , Wenqi Fan , Dongsheng Li , Jiliang Tang , Caihua Shan

The pursuit of automated scientific discovery has fueled progress from symbolic logic to modern AI, forging new frontiers in reasoning and pattern recognition. Transformers function as potential systems, where every possible relationship…

Artificial Intelligence · Computer Science 2025-01-15 Markus J. Buehler

This work presents the use of graph learning for the prediction of multi-step experimental outcomes for applications across experimental research, including material science, chemistry, and biology. The viability of geometric learning for…

Machine Learning · Computer Science 2024-08-13 Amanda A. Volk , Robert W. Epps , Jeffrey G. Ethier , Luke A. Baldwin

Recent work on neural algorithmic reasoning has demonstrated that graph neural networks (GNNs) could learn to execute classical algorithms. Doing so, however, has always used a recurrent architecture, where each iteration of the GNN aligns…

Machine Learning · Computer Science 2024-04-10 Dobrik Georgiev , Pietro Liò , Davide Buffelli

In this paper, I introduce the retrieval problem, a simple yet common reasoning task that can be solved only by transformers with a minimum number of layers, which grows logarithmically with the input size. I empirically show that large…

Machine Learning · Computer Science 2025-10-29 Tiberiu Musat

With the increasing popularity of large language models (LLMs), reasoning on basic graph algorithm problems is an essential intermediate step in assessing their abilities to process and infer complex graph reasoning tasks. Existing methods…

Computation and Language · Computer Science 2024-08-27 Qiaolong Cai , Zhaowei Wang , Shizhe Diao , James Kwok , Yangqiu Song

Low-dimensional embeddings are essential for machine learning tasks involving graphs, such as node classification, link prediction, community detection, network visualization, and network compression. Although recent studies have identified…

Machine Learning · Computer Science 2025-03-04 Nikolaos Nakis , Niels Raunkjær Holm , Andreas Lyhne Fiehn , Morten Mørup

Recent work on Graph Neural Networks has demonstrated that self-supervised pretraining can further enhance performance on downstream graph, link, and node classification tasks. However, the efficacy of pretraining tasks has not been fully…

Machine Learning · Computer Science 2023-03-28 Jonathan Pilault , Michael Galkin , Bahare Fatemi , Perouz Taslakian , David Vasquez , Christopher Pal

Recent studies have shown that Large Language Models (LLMs) can achieve strong reasoning performance by incorporating functional symbolic representations that abstractly describe graph traversal algorithms and step-by-step reasoning in…

Artificial Intelligence · Computer Science 2026-05-28 Phuong Minh Nguyen , Tien Huu Dang , Naoya Inoue

Deep graph models (e.g., graph neural networks and graph transformers) have become important techniques for leveraging knowledge across various types of graphs. Yet, the neural scaling laws on graphs, i.e., how the performance of deep graph…

Machine Learning · Computer Science 2024-12-03 Jingzhe Liu , Haitao Mao , Zhikai Chen , Tong Zhao , Neil Shah , Jiliang Tang

Transformers are a type of neural network that have demonstrated remarkable performance across various domains, particularly in natural language processing tasks. Motivated by this success, research on the theoretical understanding of…

Machine Learning · Computer Science 2025-02-18 Naoki Takeshita , Masaaki Imaizumi

We argue that Transformers are essentially graph-to-graph models, with sequences just being a special case. Attention weights are functionally equivalent to graph edges. Our Graph-to-Graph Transformer architecture makes this ability…

Computation and Language · Computer Science 2023-10-30 James Henderson , Alireza Mohammadshahi , Andrei C. Coman , Lesly Miculicich
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