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Evolving trees arise in many real-life scenarios from computer file systems and dynamic call graphs, to fake news propagation and disease spread. Most layout algorithms for static trees do not work well in an evolving setting (e.g., they…

Computational Geometry · Computer Science 2022-08-29 Kathryn Gray , Mingwei Li , Reyan Ahmed , Stephen Kobourov

Techniques from topological data analysis (TDA) have proven effective in studying time-dependent data arising in dynamic systems, such as animal swarming behavior and spatiotemporal patterns in neuroscience. While early algorithms leveraged…

Algebraic Topology · Mathematics 2026-03-06 Nadezhda Belova , Maxwell Goldberg , Facundo Memoli , Sriram Raghunath , Andrew Xie

In this paper we introduce the horizon visibility graph, a simple extension to the popular horizontal visibility graph representation of a time series, and show that it possesses a rigorous mathematical foundation in computational algebraic…

Data Analysis, Statistics and Probability · Physics 2019-06-24 Colin Stephen

Topological methods can provide a way of proposing new metrics and methods of scrutinising data, that otherwise may be overlooked. In this work, a method of quantifying the shape of data, via a topic called topological data analysis will be…

Machine Learning · Statistics 2022-09-25 Tristan Gowdridge , Nikolaos Dervilis , Keith Worden

A recent work shows how we can optimize a tree based mode of operation for a rate 1 hash function. In particular, an algorithm and a theorem are presented for selecting a good tree topology in order to optimize both the running time and the…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-04-15 Kevin Atighehchi

We congratulate Lee, Nadler and Wasserman (henceforth LNW) on a very interesting paper on new methodology and supporting theory [arXiv:0707.0481]. Treelets seem to tackle two important problems of modern data analysis at once. For datasets…

Applications · Statistics 2008-07-28 Nicolai Meinshausen , Peter Bühlmann

Recent trends in information management involve the periodic transcription of data onto secondary devices in a networked environment, and the proper scheduling of these transcriptions is critical for efficient data management. To assist in…

Databases · Computer Science 2007-05-23 Avigdor Gal , Jonathan Eckstein

It is common for researchers to record long, multiple time series from experiments or calculations. But sometimes there are no good models for the systems or no applicable mathematical theorems that can tell us when there are basic…

Chaotic Dynamics · Physics 2024-11-26 Louis Pecora , Thomas Carroll

Data quality is crucial for the successful training, generalization and performance of machine learning models. We propose to measure the quality of a subset concerning the dataset it represents, using topological data analysis techniques.…

Algebraic Topology · Mathematics 2024-10-01 Álvaro Torras-Casas , Eduardo Paluzo-Hidalgo , Rocio Gonzalez-Diaz

In social networks, information and influence diffuse among users as cascades. While the importance of studying cascades has been recognized in various applications, it is difficult to observe the complete structure of cascades in practice.…

Social and Information Networks · Computer Science 2012-10-15 Bo Zong , Yinghui Wu , Ambuj K. Singh , Xifeng Yan

Genealogical networks (i.e. family trees) are of growing interest, with the largest known data sets now including well over one billion individuals. Interest in family history also supports an 8.5 billion dollar industry whose size is…

Molecular Networks · Quantitative Biology 2023-01-31 Zachary M. Boyd , Nick Callor , Taylor Gledhill , Abigail Jenkins , Robert Snellman , Benjamin Z. Webb , Raelynn Wonnacott

A dynamic forest data structure maintains a forest (and associated data like edge weights) under edge insertions and deletions. Dynamic forests are widely used to solve online and offline graph problems. Well-known examples of dynamic…

Data Structures and Algorithms · Computer Science 2024-01-09 Benjamin Aram Berendsohn

Topological data analysis can extract effective information from higher-dimensional data. Its mathematical basis is persistent homology. The persistent homology can calculate topological features at different spatiotemporal scales of the…

Algebraic Topology · Mathematics 2023-09-29 Dinghua Shi , Zhifeng Chen , Chuang Ma , Guanrong Chen

Persistent homology (PH) is a recently developed theory in the field of algebraic topology to study shapes of datasets. It is an effective data analysis tool that is robust to noise and has been widely applied. We demonstrate a general…

Signal Processing · Electrical Eng. & Systems 2020-05-05 Yu-Min Chung , Chuan-Shen Hu , Yu-Lun Lo , Hau-Tieng Wu

Researchers have proposed many methods for fair and robust machine learning, but comprehensive empirical evaluation of their subgroup robustness is lacking. In this work, we address this gap in the context of tabular data, where sensitive…

Machine Learning · Computer Science 2023-04-18 Josh Gardner , Zoran Popović , Ludwig Schmidt

We analyze several florae (collections of plant species populating specific areas) in different geographic and climatic regions. For every list of species we produce a taxonomic classification tree and we consider its statistical…

Populations and Evolution · Quantitative Biology 2008-06-13 C. Caretta Cartozo , D. Garlaschelli , C. Ricotta , M. Barthelemy , G. Caldarelli

Finding patterns in graphs is a fundamental problem in databases and data mining. In many applications, graphs are temporal and evolve over time, so we are interested in finding durable patterns, such as triangles and paths, which persist…

Databases · Computer Science 2024-03-26 Pankaj K. Agarwal , Xiao Hu , Stavros Sintos , Jun Yang

Tree methods (recursive partitioning) are a popular class of nonparametric methods for analyzing data. One extension of the basic tree methodology is the survival tree, which applies recursive partitioning to censored survival data. There…

Methodology · Statistics 2017-03-01 Wei Fu , Jeffrey S. Simonoff

We investigate regression for variable length sequential data containing missing samples and introduce a novel tree architecture based on the Long Short-Term Memory (LSTM) networks. In our architecture, we employ a variable number of LSTM…

Machine Learning · Computer Science 2020-05-26 S. Onur Sahin , Suleyman S. Kozat

Owing to their inherently interpretable structure, decision trees are commonly used in applications where interpretability is essential. Recent work has focused on improving various aspects of decision trees, including their predictive…

Machine Learning · Statistics 2023-05-30 Dimitris Bertsimas , Vassilis Digalakis