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The top tree data structure is an important and fundamental tool in dynamic graph algorithms. Top trees have existed for decades, and today serve as an ingredient in many state-of-the-art algorithms for dynamic graphs. In this work, we give…

Data Structures and Algorithms · Computer Science 2023-02-07 Jacob Holm , Eva Rotenberg , Alice Ryhl

We consider maintaining the contour tree $\mathbb{T}$ of a piecewise-linear triangulation $\mathbb{M}$ that is the graph of a time varying height function $h: \mathbb{R}^2 \rightarrow \mathbb{R}$. We carefully describe the combinatorial…

Computational Geometry · Computer Science 2014-06-26 Pankaj K. Agarwal , Lars Arge , Thomas Mølhave , Morten Revsbæk , Jungwoo Yang

In the theoretical study of distributed communication networks, "history trees" are a discrete structure that naturally models the concept that anonymous agents become distinguishable upon receiving different sets of messages from…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-07-02 Giovanni Viglietta

The dynamic trees problem is to maintain a forest subject to edge insertions and deletions while facilitating queries such as connectivity, path weights, and subtree weights. Dynamic trees are a fundamental building block of a large number…

Data Structures and Algorithms · Computer Science 2020-10-27 Umut A. Acar , Daniel Anderson , Guy E. Blelloch , Laxman Dhulipala , Sam Westrick

During the past decades significant efforts have been made to propose data structures for answering connectivity queries on fully dynamic graphs, i.e., graphs with frequent insertions and deletions of edges. However, a comprehensive…

Databases · Computer Science 2025-01-13 Qing Chen , Michael H. Böhlen , Sven Helmer

We use topological data analysis to study "functional networks" that we construct from time-series data from both experimental and synthetic sources. We use persistent homology with a weight rank clique filtration to gain insights into…

Quantitative Methods · Quantitative Biology 2017-05-24 Bernadette J. Stolz , Heather A. Harrington , Mason A. Porter

Hierarchical tree structures are common in many real-world systems, from tree roots and branches to neuronal dendrites and biologically inspired artificial neural networks, as well as in technological networks for organizing and searching…

Statistical Mechanics · Physics 2025-02-04 Davide Cipollini , Lambert Schomaker

Recent studies have actively employed persistent homology (PH), a topological data analysis technique, to analyze the topological information in time series data. Many successful studies have utilized graph representations of time series…

Algebraic Topology · Mathematics 2025-12-15 Eunwoo Heo , Jae-Hun Jung

Cyber-physical systems come with increasingly complex architectures and failure modes, which complicates the task of obtaining accurate system reliability models. At the same time, with the emergence of the (industrial) Internet-of-Things,…

Formal Languages and Automata Theory · Computer Science 2019-09-16 Alexis Linard , Doina Bucur , Marielle Stoelinga

Finding an optimal parameter of a black-box function is important for searching stable material structures and finding optimal neural network structures, and Bayesian optimization algorithms are widely used for the purpose. However, most of…

Machine Learning · Computer Science 2019-02-27 Tatsuya Shiraishi , Tam Le , Hisashi Kashima , Makoto Yamada

Many multi-variate time series obtained in the natural sciences and engineering possess a repetitive behavior, as for instance state-space trajectories of industrial machines in discrete automation. Recovering the times of recurrence from…

Computational Geometry · Computer Science 2025-05-20 Simon Schindler , Elias Steffen Reich , Saverio Messineo , Simon Hoher , Stefan Huber

Broadband infrastructure owners do not always know how their customers are connected in the local networks, which are structured as rooted trees. A recent study is able to infer the topology of a local network using discrete time series…

Machine Learning · Computer Science 2024-01-03 Tobias Engelhardt Rasmussen , Siv Sørensen

Highly dynamic networks are characterized by frequent changes in the availability of communication links. These networks are often partitioned into several components, which split and merge unpredictably. We present a distributed algorithm…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-10-25 Matthieu Barjon , Arnaud Casteigts , Serge Chaumette , Colette Johnen , Yessin M. Neggaz

We introduce Hyper-Trees as a novel framework for modeling time series data using gradient boosted trees. Unlike conventional tree-based approaches that forecast time series directly, Hyper-Trees learn the parameters of a target time series…

Machine Learning · Computer Science 2026-02-09 Alexander März , Kashif Rasul

Behavior trees represent a hierarchical and modular way of combining several low-level control policies into a high-level task-switching policy. Hybrid dynamical systems can also be seen in terms of task switching between different…

Systems and Control · Electrical Eng. & Systems 2021-11-11 Christopher Iliffe Sprague , Petter Ögren

The automatic generation of decision trees based on off-line reasoning on models of a domain is a reasonable compromise between the advantages of using a model-based approach in technical domains and the constraints imposed by embedded…

Artificial Intelligence · Computer Science 2011-06-28 L. Console , C. Picardi , D. Theseider Duprè

Many real-world complex systems, such as epidemic spreading networks and ecosystems, can be modeled as networked dynamical systems that produce multivariate time series. Learning the intrinsic dynamics from observational data is pivotal for…

Machine Learning · Computer Science 2024-12-30 Yanna Ding , Zijie Huang , Malik Magdon-Ismail , Jianxi Gao

Persistent homology probes topological properties from point clouds and functions. By looking at multiple scales simultaneously, one can record the births and deaths of topological features as the scale varies. In this paper we use a…

Understanding the response of an output variable to multi-dimensional inputs lies at the heart of many data exploration endeavours. Topology-based methods, in particular Morse theory and persistent homology, provide a useful framework for…

Graphics · Computer Science 2022-08-16 Yarden Livnat , Dan Maljovec , Attila Gyulassy , Dr Baptiste Mouginot , Valerio Pascucci

The tree is an essential data structure in many applications. In a distributed application, such as a distributed file system, the tree is replicated.To improve performance and availability, different clients should be able to update their…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-01-20 Sreeja Nair , Filipe Meirim , Mário Pereira , Carla Ferreira , Marc Shapiro