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Rich data and powerful machine learning models allow us to design drugs for a specific protein target \textit{in silico}. Recently, the inclusion of 3D structures during targeted drug design shows superior performance to other target-free…

Biomolecules · Quantitative Biology 2023-03-08 Jiaqi Guan , Wesley Wei Qian , Xingang Peng , Yufeng Su , Jian Peng , Jianzhu Ma

Diffusion models are a class of generative models that serve to establish a stochastic transport map between an empirically observed, yet unknown, target distribution and a known prior. Despite their remarkable success in real-world…

Machine Learning · Computer Science 2025-03-13 Puheng Li , Zhong Li , Huishuai Zhang , Jiang Bian

Aligning diffusion models to downstream tasks often requires finetuning new models or gradient-based guidance at inference time to enable sampling from the reward-tilted posterior. In this work, we explore a simple inference-time…

Computer Vision and Pattern Recognition · Computer Science 2025-05-06 Anuj Singh , Sayak Mukherjee , Ahmad Beirami , Hadi Jamali-Rad

A critical task in graph signal processing is to estimate the true signal from noisy observations over a subset of nodes, also known as the reconstruction problem. In this paper, we propose a node-adaptive regularization for graph signal…

Signal Processing · Electrical Eng. & Systems 2021-02-08 Maosheng Yang , Mario Coutino , Geert Leus , Elvin Isufi

In recent years, machine learning models like DALL-E, Craiyon, and Stable Diffusion have gained significant attention for their ability to generate high-resolution images from concise descriptions. Concurrently, quantum computing is showing…

Synthesis planning and reaction outcome prediction are two fundamental problems in computer-aided organic chemistry for which a variety of data-driven approaches have emerged. Natural language approaches that model each problem as a…

Machine Learning · Computer Science 2021-10-20 Zhengkai Tu , Connor W. Coley

Diffusion models have emerged as a key pillar of foundation models in visual domains. One of their critical applications is to universally solve different downstream inverse tasks via a single diffusion prior without re-training for each…

Machine Learning · Computer Science 2023-10-03 Morteza Mardani , Jiaming Song , Jan Kautz , Arash Vahdat

Denoising diffusion models have emerged as a dominant approach for image generation, however they still suffer from slow convergence in training and color shift issues in sampling. In this paper, we identify that these obstacles can be…

Computer Vision and Pattern Recognition · Computer Science 2024-08-06 Hu Yu , Li Shen , Jie Huang , Hongsheng Li , Feng Zhao

Can neural networks learn to compare graphs without feature engineering? In this paper, we show that it is possible to learn representations for graph similarity with neither domain knowledge nor supervision (i.e.\ feature engineering or…

Machine Learning · Computer Science 2019-04-23 Rami Al-Rfou , Dustin Zelle , Bryan Perozzi

Diffusion models are widely used for generative tasks across domains. Given a pre-trained diffusion model, it is often desirable to fine-tune it further either to correct for errors in learning or to align with downstream applications.…

Diffusion models have achieved great success in image generation tasks. However, the lengthy denoising process and complex neural networks hinder their low-latency applications in real-world scenarios. Quantization can effectively reduce…

Computer Vision and Pattern Recognition · Computer Science 2025-06-24 Xuewen Liu , Zhikai Li , Junrui Xiao , Mengjuan Chen , Jianquan Li , Qingyi Gu

Aligning diffusion models with user preferences has been a key challenge. Existing methods for aligning diffusion models either require retraining or are limited to differentiable reward functions. To address these limitations, we propose a…

Computer Vision and Pattern Recognition · Computer Science 2025-02-28 Po-Hung Yeh , Kuang-Huei Lee , Jun-Cheng Chen

The invariance to permutations of the adjacency matrix, i.e., graph isomorphism, is an overarching requirement for Graph Neural Networks (GNNs). Conventionally, this prerequisite can be satisfied by the invariant operations over node…

Machine Learning · Computer Science 2022-05-31 Zhongyu Huang , Yingheng Wang , Chaozhuo Li , Huiguang He

We present an approach to synthesizing new graph structures from empirically specified distributions. The generative model is an auto-decoder that learns to synthesize graphs from latent codes. The graph synthesis model is learned jointly…

Machine Learning · Computer Science 2020-06-05 Sohil Atul Shah , Vladlen Koltun

Graph condensation (GC) aims to distill the original graph into a small-scale graph, mitigating redundancy and accelerating GNN training. However, conventional GC approaches heavily rely on rigid GNNs and task-specific supervision. Such a…

Machine Learning · Computer Science 2025-09-19 Yeyu Yan , Shuai Zheng , Wenjun Hui , Xiangkai Zhu , Dong Chen , Zhenfeng Zhu , Yao Zhao , Kunlun He

Incorporating diffusion models in the image compression domain has the potential to produce realistic and detailed reconstructions, especially at extremely low bitrates. Previous methods focus on using diffusion models as expressive…

Image and Video Processing · Electrical Eng. & Systems 2024-10-10 Lucas Relic , Roberto Azevedo , Markus Gross , Christopher Schroers

Many applications of machine learning require a model to make accurate pre-dictions on test examples that are distributionally different from training ones, while task-specific labels are scarce during training. An effective approach to…

Machine Learning · Computer Science 2020-02-20 Weihua Hu , Bowen Liu , Joseph Gomes , Marinka Zitnik , Percy Liang , Vijay Pande , Jure Leskovec

Diffusion models have emerged as powerful priors for image editing tasks such as inpainting and local modification, where the objective is to generate realistic content that remains consistent with observed regions. In particular, zero-shot…

Computer Vision and Pattern Recognition · Computer Science 2026-04-30 Badr Moufad , Navid Bagheri Shouraki , Alain Oliviero Durmus , Thomas Hirtz , Eric Moulines , Jimmy Olsson , Yazid Janati

Current generative models, such as autoregressive and diffusion approaches, decompose high-dimensional data distribution learning into a series of simpler subtasks. However, inherent conflicts arise during the joint optimization of these…

Computer Vision and Pattern Recognition · Computer Science 2025-03-25 Ruixiao Dong , Mengde Xu , Zigang Geng , Li Li , Han Hu , Shuyang Gu

Latent Diffusion Models (LDMs) are known to have an unstable generation process, where even small perturbations or shifts in the input noise can lead to significantly different outputs. This hinders their applicability in applications…

Computer Vision and Pattern Recognition · Computer Science 2025-09-23 Yifan Zhou , Zeqi Xiao , Shuai Yang , Xingang Pan