Related papers: Maximizing Phylogenetic Diversity under Ecological…
A defensive alliance in an undirected graph $G=(V,E)$ is a non-empty set of vertices $S$ satisfying the condition that every vertex $v\in S$ has at least as many neighbours (including itself) in $S$ as it has in $V\setminus S$. We consider…
A proportionally dense subgraph (PDS) of a graph is an induced subgraph of size at least two such that every vertex in the subgraph has proportionally as many neighbors inside as outside of the subgraph. Then, maxPDS is the problem of…
A vertex set $S$ of a graph $G$ is geodetic if every vertex of $G$ lies on a shortest path between two vertices in $S$. Given a graph $G$ and $k \in \mathbb N$, the NP-hard Geodetic Set problem asks whether there is a geodetic set of size…
Combining a set of phylogenetic trees into a single phylogenetic network that explains all of them is a fundamental challenge in evolutionary studies. Existing methods are computationally expensive and can either handle only small numbers…
Diversity maximization is a fundamental problem in web search and data mining. For a given dataset $S$ of $n$ elements, the problem requires to determine a subset of $S$ containing $k\ll n$ "representatives" which minimize some diversity…
We use food webs generated by a model to investigate the effects of deleting species on other species in the web and on the web as a whole. The model incorporates a realistic population dynamics, adaptive foragers and other features which…
We study the parameterized complexity of the classical Edge Hamiltonian Path problem and give several fixed-parameter tractability results. First, we settle an open question of Demaine et al. by showing that Edge Hamiltonian Path is FPT…
In the Directed Steiner Network problem, the input is a directed graph G, a subset T of k vertices of G called the terminals, and a demand graph D on T. The task is to find a subgraph H of G with the minimum number of edges such that for…
Given an edge-weighted graph $G$ on $n$ nodes, the NP-hard Max-Cut problem asks for a node bipartition such that the sum of edge weights joining the different partitions is maximized. We propose a fixed-parameter tractable algorithm…
This paper revisits the classical Edge Disjoint Paths (EDP) problem, where one is given an undirected graph $G$ and a set of terminal pairs $P$ and asks whether $G$ contains a set of pairwise edge-disjoint paths connecting every terminal…
Fixed tree topologies are widely used in phylodynamic analyses to reduce computational burden, yet the consequences of this assumption remain insufficiently understood. Here, we systematically assess the impact of various fixed-topology…
We study the following general disjoint paths problem: given a supply graph $G$, a set $T\subseteq V(G)$ of terminals, a demand graph $H$ on the vertices $T$, and an integer $k$, the task is to find a set of $k$ pairwise vertex-disjoint…
Short spanning trees subject to additional constraints are important building blocks in various approximation algorithms. Especially in the context of the Traveling Salesman Problem (TSP), new techniques for finding spanning trees with…
In this paper we revisit the classical Edge Disjoint Paths (EDP) problem, where one is given an undirected graph G and a set of terminal pairs P and asks whether G contains a set of pairwise edge-disjoint paths connecting every terminal…
We consider the Shortest Odd Path problem, where given an undirected graph $G$, a weight function on its edges, and two vertices $s$ and $t$ in $G$, the aim is to find an $(s,t)$-path with odd length and, among all such paths, of minimum…
Two kinds of approximation algorithms exist for the k-BALANCED PARTITIONING problem: those that are fast but compute unsatisfying approximation ratios, and those that guarantee high quality ratios but are slow. In this paper we prove that…
Phylogenetic networks are increasingly used in evolutionary biology to represent the history of species that have undergone reticulate events such as horizontal gene transfer, hybrid speciation and recombination. One of the most fundamental…
The Dollo model for reconstructing evolutionary trees from binary characters has been proposed as a generalization of the infinite sites model, also known as the Perfect Phylogeny. In particular, the Dollo model is considered more realistic…
The power dominating set (PDS) problem is the following extension of the well-known dominating set problem: find a smallest-size set of nodes $S$ that power dominates all the nodes, where a node $v$ is power dominated if (1) $v$ is in $S$…
The problem of maximizing the $p$-th power of a $p$-norm over a halfspace-presented polytope in $\R^d$ is a convex maximization problem which plays a fundamental role in computational convexity. It has been shown in 1986 that this problem…