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Any cutting-edge scientific research project requires a myriad of computational tools for data generation, management, analysis and visualization. Python is a flexible and extensible scientific programming platform that offered the perfect…

Quantitative Methods · Quantitative Biology 2008-03-14 Julius B. Lucks

Modern scientific applications predominantly run on large-scale computing platforms, necessitating collaboration between scientific domain experts and high-performance computing (HPC) experts. While domain experts are often skilled in…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-04-03 Yu Zhang , Zixiao Wang , Jin Zhao , Yuluo Guo , Hui Yu , Zhiying Huang , Xuanhua Shi , Xiaofei Liao

Rapid technological progress in computer sciences finds solutions and at the same time creates ever more complex requirements. Due to an evolving complexity todays programming languages provide powerful frameworks which offer standard…

Human-Computer Interaction · Computer Science 2019-05-17 Igor Ivkic , Alexander Wöhrer , Markus Tauber

Within the last years, Python became more prominent in the scientific community and is now used for simulations, machine learning, and data analysis. All these tasks profit from additional compute power offered by parallelism and…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-10-26 Andreas Gocht , Robert Schöne , Jan Frenzel

Python is rapidly becoming the lingua franca of machine learning and scientific computing. With the broad use of frameworks such as Numpy, SciPy, and TensorFlow, scientific computing and machine learning are seeing a productivity boost on…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-09-01 Zane Fink , Simeng Liu , Jaemin Choi , Matthias Diener , Laxmikant V. Kale

Parallel dataflow systems are a central part of most analytic pipelines for big data. The iterative nature of many analysis and machine learning algorithms, however, is still a challenge for current systems. While certain types of bulk…

Databases · Computer Science 2012-08-02 Stephan Ewen , Kostas Tzoumas , Moritz Kaufmann , Volker Markl

Plant scientists use Functional Structural Plant Models (FSPMs) to model plant systems within a limited space-time range. To allow FSPMs to abstract complex plant systems beyond a single model's limitation, an integration that compounds…

Computers and Society · Computer Science 2018-07-11 Qinqin Long , Winfried Kurth , Christophe Pradal , Vincent Migault , Benoît Pallas

Writing efficient hybrid parallel code is tedious, error-prone, and requires good knowledge of both parallel programming and multithreading such as MPI and OpenMP, resp. Therefore, we present a framework which is based on a job model that…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-07-03 Ralf-Peter Mundani , Marko Ljucović , Ernst Rank

Traditional heterogeneous parallel algorithms, designed for heterogeneous clusters of workstations, are based on the assumption that the absolute speed of the processors does not depend on the size of the computational task. This assumption…

Distributed, Parallel, and Cluster Computing · Computer Science 2011-09-15 Alexey Lastovetsky , Ravi Reddy , Vladimir Rychkov , David Clarke

Python has become the de facto language for scientific computing. Programming in Python is highly productive, mainly due to its rich science-oriented software ecosystem built around the NumPy module. As a result, the demand for Python…

Process mining, i.e., a sub-field of data science focusing on the analysis of event data generated during the execution of (business) processes, has seen a tremendous change over the past two decades. Starting off in the early 2000's, with…

Software Engineering · Computer Science 2019-05-16 Alessandro Berti , Sebastiaan J. van Zelst , Wil van der Aalst

Functional Reactive Programming (FRP) is a paradigm that has simplified the construction of reactive programs. There are many libraries that implement incarnations of FRP, using abstractions such as Applicative, Monads, and Arrows. However,…

Programming Languages · Computer Science 2019-05-27 Bernd Finkbeiner , Felix Klein , Ruzica Piskac , Mark Santolucito

Functional programming represents a modern tool for applying and implementing software. The state of the art in functional programming reports an increasing number of methodologies in this paradigm. However, extensive interdisciplinary…

Computers and Society · Computer Science 2020-08-25 Pedro Figueirêdo , Yuri Kim , Nghia Le Minh , Evan Sitt , Xue Ying , Viktória Zsók

We present the parallel particle filtering (PPF) software library, which enables hybrid shared-memory/distributed-memory parallelization of particle filtering (PF) algorithms combining the Message Passing Interface (MPI) with multithreading…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-04-07 Ömer Demirel , Ihor Smal , Wiro Niessen , Erik Meijering , Ivo F. Sbalzarini

FluidDyn is a project to foster open-science and open-source in the fluid dynamics community. It is thought of as a research project to channel open-source dynamics, methods and tools to do science. We propose a set of Python packages…

Other Computer Science · Computer Science 2019-04-10 Pierre Augier , Ashwin Vishnu Mohanan , Cyrille Bonamy

The Python package fluidfft provides a common Python API for performing Fast Fourier Transforms (FFT) in sequential, in parallel and on GPU with different FFT libraries (FFTW, P3DFFT, PFFT, cuFFT). fluidfft is a comprehensive FFT framework…

Mathematical Software · Computer Science 2019-04-11 Ashwin Vishnu Mohanan , Cyrille Bonamy , Pierre Augier

Functional data clustering is to identify heterogeneous morphological patterns in the continuous functions underlying the discrete measurements/observations. Application of functional data clustering has appeared in many publications across…

Methodology · Statistics 2022-10-04 Mimi Zhang , Andrew Parnell

Inductive programming (IP) is a field whose main goal is synthesising programs that respect a set of examples, given some form of background knowledge. This paper is concerned with a subfield of IP, inductive functional programming (IFP).…

Programming Languages · Computer Science 2020-11-19 Andrei Diaconu

In this report, we present a new programming model based on Pipelines and Operators, which are the building blocks of programs written in PiCo, a DSL for Data Analytics Pipelines. In the model we propose, we use the term Pipeline to denote…

Programming Languages · Computer Science 2017-05-05 Maurizio Drocco , Claudia Misale , Guy Tremblay , Marco Aldinucci

The freud Python package is a powerful library for analyzing simulation data. Written with modern simulation and data analysis workflows in mind, freud provides a Python interface to fast, parallelized C++ routines that run efficiently on…