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Learning low-dimensional numerical representations from symbolic data, e.g., embedding the nodes of a graph into a geometric space, is an important concept in machine learning. While embedding into Euclidean space is common, recent…

Machine Learning · Computer Science 2024-10-10 Thomas Bläsius , Jean-Pierre von der Heydt , Maximilian Katzmann , Nikolai Maas

We perform an analysis of the Cosmic Web as a complex network, which is built on a $\Lambda$CDM cosmological simulation. For each of nodes, which are in this case dark matter halos formed in the simulation, we compute 10 network metrics,…

Cosmology and Nongalactic Astrophysics · Physics 2020-08-04 Maksym Tsizh , Bohdan Novosyadlyj , Yurij Holovatch , Noam I Libeskind

A fundamental understanding of the network architecture of the brain is necessary for the further development of theories explicating circuit function. Perhaps as a derivative of its initial application to abstract informational systems,…

Neurons and Cognition · Quantitative Biology 2018-07-13 Jennifer Stiso , Danielle Bassett

Although deep learning approaches have had tremendous success in image, video and audio processing, computer vision, and speech recognition, their applications to three-dimensional (3D) biomolecular structural data sets have been hindered…

Quantitative Methods · Quantitative Biology 2017-11-01 Zixuan Cang , Guo-Wei Wei

Graph matching can be formalized as a combinatorial optimization problem, where there are corresponding relationships between pairs of nodes that can be represented as edges. This problem becomes challenging when there are potential…

Computer Vision and Pattern Recognition · Computer Science 2023-01-06 Dongdong Chen , Yuxing Dai , Lichi Zhang , Zhihong Zhang

High-dimensional multiplex graphs are characterized by their high number of complementary and divergent dimensions. The existence of multiple hierarchical latent relations between the graph dimensions poses significant challenges to…

Machine Learning · Computer Science 2025-01-30 Kamel Abdous , Nairouz Mrabah , Mohamed Bouguessa

Bipartite networks appear in many real-world contexts, linking entities across two distinct sets. They are often analyzed via one-mode projections, but such projections can introduce artificial correlations and inflated clustering,…

Physics and Society · Physics 2026-01-12 Robert Jankowski , Roya Aliakbarisani , M. Ángeles Serrano , Marián Boguñá

With the widespread use of information technologies, information networks are becoming increasingly popular to capture complex relationships across various disciplines, such as social networks, citation networks, telecommunication networks,…

Social and Information Networks · Computer Science 2018-07-20 Daokun Zhang , Jie Yin , Xingquan Zhu , Chengqi Zhang

The use of satellite networks has increased significantly in recent years due to their advantages over purely terrestrial systems, such as higher availability and coverage. However, to effectively provide these services, satellite networks…

Machine Learning · Computer Science 2026-03-30 João Norberto , Ricardo Ferreira , Cláudia Soares

In this research, we propose a deep learning based approach for speeding up the topology optimization methods. The problem we seek to solve is the layout problem. The main novelty of this work is to state the problem as an image…

Machine Learning · Computer Science 2017-09-28 Ivan Sosnovik , Ivan Oseledets

We perform topological data analysis on the internal states of convolutional deep neural networks to develop an understanding of the computations that they perform. We apply this understanding to modify the computations so as to (a) speed…

Machine Learning · Computer Science 2018-11-06 Gunnar Carlsson , Rickard Brüel Gabrielsson

Understanding the structural complexity and predictability of complex networks is a central challenge in network science. Although recent studies have revealed a relationship between compression-based entropy and link prediction…

Social and Information Networks · Computer Science 2025-10-14 Sebastián Brzovic , Cristóbal Rojas , Andrés Abeliuk

Networks found in the real-world are numerous and varied. A common type of network is the heterogeneous network, where the nodes (and edges) can be of different types. Accordingly, there have been efforts at learning representations of…

Social and Information Networks · Computer Science 2021-06-21 Lili Wang , Chongyang Gao , Chenghan Huang , Ruibo Liu , Weicheng Ma , Soroush Vosoughi

Topological correctness plays a critical role in many image segmentation tasks, yet most networks are trained using pixel-wise loss functions, such as Dice, neglecting topological accuracy. Existing topology-aware methods often lack robust…

Computer Vision and Pattern Recognition · Computer Science 2025-04-21 Laurin Lux , Alexander H. Berger , Alexander Weers , Nico Stucki , Daniel Rueckert , Ulrich Bauer , Johannes C. Paetzold

Determination of the symmetry property of superconducting gaps has been a central issue in studies to understand the mechanisms of unconventional superconductivity. Although it is often difficult to completely achieve the aforementioned…

Superconductivity · Physics 2022-02-03 Seishiro Ono , Ken Shiozaki

Graph Neural Networks (GNNs) have shown great promise in learning node embeddings for link prediction (LP). While numerous studies aim to improve the overall LP performance of GNNs, none have explored its varying performance across…

Machine Learning · Computer Science 2023-10-10 Yu Wang , Tong Zhao , Yuying Zhao , Yunchao Liu , Xueqi Cheng , Neil Shah , Tyler Derr

Modern representation learning increasingly relies on unsupervised and self-supervised methods trained on large-scale unlabeled data. While these approaches achieve impressive generalization across tasks and domains, evaluating embedding…

The topological (or graph) structures of real-world networks are known to be predictive of multiple dynamic properties of the networks. Conventionally, a graph structure is represented using an adjacency matrix or a set of hand-crafted…

Social and Information Networks · Computer Science 2016-10-21 Cheng Li , Xiaoxiao Guo , Qiaozhu Mei

We propose a novel approach for preserving topological structures of the input space in latent representations of autoencoders. Using persistent homology, a technique from topological data analysis, we calculate topological signatures of…

Machine Learning · Computer Science 2021-06-01 Michael Moor , Max Horn , Bastian Rieck , Karsten Borgwardt

Large-scale quantum networks, necessary for distributed quantum information processing, are posited to have quantum entangled systems between distant network nodes. The extent and quality of distributed entanglement in a quantum network,…

Quantum Physics · Physics 2024-01-08 Md Sohel Mondal , Dov Fields , Vladimir S. Malinovsky , Siddhartha Santra
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