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Foundation models for structured electronic health records (EHRs) are pretrained on longitudinal sequences of timestamped clinical events to learn adaptable patient representations. Tokenization -- how these timelines are converted into…

Volume Electron Microscopy (VEM) is crucial for 3D tissue imaging but often produces anisotropic data with poor axial resolution, hindering visualization and downstream analysis. Existing methods for isotropic reconstruction often suffer…

Computer Vision and Pattern Recognition · Computer Science 2026-03-03 Longmi Gao , Pan Gao

Semantic segmentation and stereo matching, respectively analogous to the ventral and dorsal streams in our human brain, are two key components of autonomous driving perception systems. Addressing these two tasks with separate networks is no…

Computer Vision and Pattern Recognition · Computer Science 2025-07-04 Guanfeng Tang , Zhiyuan Wu , Jiahang Li , Ping Zhong , We Ye , Xieyuanli Chen , Huiming Lu , Rui Fan

Recently, open-vocabulary learning has emerged to accomplish segmentation for arbitrary categories of text-based descriptions, which popularizes the segmentation system to more general-purpose application scenarios. However, existing…

Computer Vision and Pattern Recognition · Computer Science 2023-03-31 Jie Qin , Jie Wu , Pengxiang Yan , Ming Li , Ren Yuxi , Xuefeng Xiao , Yitong Wang , Rui Wang , Shilei Wen , Xin Pan , Xingang Wang

Deep neural networks are powerful tools for biomedical image segmentation. These models are often trained with heavy supervision, relying on pairs of images and corresponding voxel-level labels. However, obtaining segmentations of…

Image and Video Processing · Electrical Eng. & Systems 2020-04-30 Evan M. Yu , Juan Eugenio Iglesias , Adrian V. Dalca , Mert R. Sabuncu

Visual neural decoding aims to extract and interpret original visual experiences directly from human brain activity. Recent studies have demonstrated the feasibility of decoding visual semantic categories from electroencephalography (EEG)…

Computer Vision and Pattern Recognition · Computer Science 2026-04-02 Hongzhou Chen , Lianghua He , Yihang Liu , Longzhen Yang , Shaohua Shang , MengChu Zhou

Determining the types of neurons within a nervous system plays a significant role in the analysis of brain connectomics and the investigation of neurological diseases. However, the efficiency of utilizing anatomical, physiological, or…

Neurons and Cognition · Quantitative Biology 2024-03-27 Minghui Liao , Guojia Wan , Bo Du

Three-dimensional (3D) medical images, such as Computed Tomography (CT) and Magnetic Resonance Imaging (MRI), are essential for clinical applications. However, the need for diverse and comprehensive representations is particularly…

Computer Vision and Pattern Recognition · Computer Science 2025-05-26 Siwen Wang , Churan Wang , Fei Gao , Lixian Su , Fandong Zhang , Yizhou Wang , Yizhou Yu

In the recent past, complex deep neural networks have received huge interest in various document understanding tasks such as document image classification and document retrieval. As many document types have a distinct visual style, learning…

Computer Vision and Pattern Recognition · Computer Science 2023-05-12 Souhail Bakkali , Ziheng Ming , Mickael Coustaty , Marçal Rusiñol

Recognition and reasoning are two pillars of visual understanding. However, these tasks have an imbalance in focus; whereas recent advances in neural networks have shown strong empirical performance in visual recognition, there has been…

Computer Vision and Pattern Recognition · Computer Science 2023-11-14 Calvin Luo , Boqing Gong , Ting Chen , Chen Sun

Large multimodal models (LMMs) often suffer from severe inference inefficiency due to the large number of visual tokens introduced by image encoders. While recent token compression methods, such as pruning and merging, have shown promise in…

Computer Vision and Pattern Recognition · Computer Science 2025-11-18 Tianfan Peng , Yuntao Du , Pengzhou Ji , Shijie Dong , Kailin Jiang , Mingchuan Ma , Yijun Tian , Jinhe Bi , Qian Li , Wei Du , Feng Xiao , Lizhen Cui

Binarization is an attractive strategy for implementing lightweight Deep Convolutional Neural Networks (CNNs). Despite the unquestionable savings offered, memory footprint above all, it may induce an excessive accuracy loss that prevents a…

Machine Learning · Computer Science 2019-12-30 Luca Mocerino , Andrea Calimera

We introduce a two-stage self-supervised framework that combines the Joint-Embedding Predictive Architecture (JEPA) with a Density Adaptive Attention Mechanism (DAAM) for learning robust speech representations. Stage~1 uses JEPA with DAAM…

Masked image modeling (MIM) has become a leading self-supervised learning strategy. MIMs such as Masked Autoencoder (MAE) learn strong representations by randomly masking input tokens for the encoder to process, with the decoder…

Computer Vision and Pattern Recognition · Computer Science 2024-08-27 Taekyung Kim , Sanghyuk Chun , Byeongho Heo , Dongyoon Han

We aim to improve segmentation through the use of machine learning tools during region agglomeration. We propose an active learning approach for performing hierarchical agglomerative segmentation from superpixels. Our method combines…

Computer Vision and Pattern Recognition · Computer Science 2015-03-13 Juan Nunez-Iglesias , Ryan Kennedy , Toufiq Parag , Jianbo Shi , Dmitri B. Chklovskii

Mixup is a commonly adopted data augmentation technique for image classification. Recent advances in mixup methods primarily focus on mixing based on saliency. However, many saliency detectors require intense computation and are especially…

Computer Vision and Pattern Recognition · Computer Science 2022-10-17 Hyeong Kyu Choi , Joonmyung Choi , Hyunwoo J. Kim

Understanding cell identity and function through single-cell level sequencing data remains a key challenge in computational biology. We present a novel framework that leverages gene-specific textual annotations from the NCBI Gene database…

Genomics · Quantitative Biology 2025-05-14 Douglas Jiang , Zilin Dai , Luxuan Zhang , Qiyi Yu , Haoqi Sun , Feng Tian

Reconstruction of neuroanatomy is a fundamental problem in neuroscience. Stochastic expression of colors in individual cells is a promising tool, although its use in the nervous system has been limited due to various sources of variability…

Neurons and Cognition · Quantitative Biology 2017-01-24 Uygar Sümbül , Douglas Roussien , Fei Chen , Nicholas Barry , Edward S. Boyden , Dawen Cai , John P. Cunningham , Liam Paninski

Electron microscopy (EM) allows the identification of intracellular organelles such as mitochondria, providing insights for clinical and scientific studies. In recent years, a number of novel deep learning architectures have been published…

Image and Video Processing · Electrical Eng. & Systems 2023-10-03 Daniel Franco-Barranco , Arrate Muñoz-Barrutia , Ignacio Arganda-Carreras

Atom segmentation and localization, noise reduction and deblurring of atomic-resolution scanning transmission electron microscopy (STEM) images with high precision and robustness is a challenging task. Although several conventional…

Materials Science · Physics 2021-02-23 Ruoqian Lin , Rui Zhang , Chunyang Wang , Xiao-Qing Yang , Huolin L. Xin