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We propose a new method for hierarchical clustering based on the optimisation of a cost function over trees of limited depth, and we derive a message--passing method that allows to solve it efficiently. The method and algorithm can be…

Disordered Systems and Neural Networks · Physics 2015-05-14 M. Bailly-Bechet , S. Bradde , A. Braunstein , A. Flaxman , L. Foini , R. Zecchina

Hierarchical clustering (HC) algorithms are generally limited to small data instances due to their runtime costs. Here we mitigate this shortcoming and explore fast HC algorithms based on random projections for single (SLC) and average…

Information Retrieval · Computer Science 2014-01-24 Johannes Schneider , Michail Vlachos

The Minimum Quartet Tree Cost problem is to construct an optimal weight tree from the $3{n \choose 4}$ weighted quartet topologies on $n$ objects, where optimality means that the summed weight of the embedded quartet topologies is optimal…

Machine Learning · Computer Science 2014-09-16 Rudi L. Cilibrasi , Paul M. B. Vitanyi

One of the main challenges for hierarchical clustering is how to appropriately identify the representative points in the lower level of the cluster tree, which are going to be utilized as the roots in the higher level of the cluster tree…

Machine Learning · Statistics 2021-11-16 Wen-Bo Xie , Zhen Liu , Jaideep Srivastava

Multivariate time series forecasting with hierarchical structure is widely used in real-world applications, e.g., sales predictions for the geographical hierarchy formed by cities, states, and countries. The hierarchical time series (HTS)…

Machine Learning · Computer Science 2023-10-10 Fan Zhou , Chen Pan , Lintao Ma , Yu Liu , Shiyu Wang , James Zhang , Xinxin Zhu , Xuanwei Hu , Yunhua Hu , Yangfei Zheng , Lei Lei , Yun Hu

Hierarchical structure is ubiquitous in data across many domains. There are many hierarchical clustering methods, frequently used by domain experts, which strive to discover this structure. However, most of these methods limit discoverable…

Machine Learning · Computer Science 2012-03-19 Charles Blundell , Yee Whye Teh , Katherine A. Heller

Hierarchical clustering is a recursive partitioning of a dataset into clusters at an increasingly finer granularity. Motivated by the fact that most work on hierarchical clustering was based on providing algorithms, rather than optimizing a…

Data Structures and Algorithms · Computer Science 2017-04-10 Vincent Cohen-Addad , Varun Kanade , Frederik Mallmann-Trenn , Claire Mathieu

Hierarchical clustering is an important technique to organize big data for exploratory data analysis. However, existing one-size-fits-all hierarchical clustering methods often fail to meet the diverse needs of different users. To address…

Machine Learning · Computer Science 2020-09-22 Weikai Yang , Xiting Wang , Jie Lu , Wenwen Dou , Shixia Liu

We present a theory and an objective function for similarity-based hierarchical clustering of probabilistic partial orders and directed acyclic graphs (DAGs). Specifically, given elements $x \le y$ in the partial order, and their respective…

Machine Learning · Computer Science 2024-12-11 Daniel Bakkelund

We study the cost function for hierarchical clusterings introduced by [arXiv:1510.05043] where hierarchies are treated as first-class objects rather than deriving their cost from projections into flat clusters. It was also shown in…

Machine Learning · Computer Science 2016-10-31 Aurko Roy , Sebastian Pokutta

The Hierarchical Clustering (HC) problem consists of building a hierarchy of clusters to represent a given dataset. Motivated by the modern large-scale applications, we study the problem in the \streaming model, in which the memory is…

Data Structures and Algorithms · Computer Science 2022-06-16 Sepehr Assadi , Vaggos Chatziafratis , Jakub Łącki , Vahab Mirrokni , Chen Wang

Hierarchical clustering is a fundamental task often used to discover meaningful structures in data, such as phylogenetic trees, taxonomies of concepts, subtypes of cancer, and cascades of particle decays in particle physics. Typically…

Data Structures and Algorithms · Computer Science 2020-10-23 Craig S. Greenberg , Sebastian Macaluso , Nicholas Monath , Ji-Ah Lee , Patrick Flaherty , Kyle Cranmer , Andrew McGregor , Andrew McCallum

Finding a set of nested partitions of a dataset is useful to uncover relevant structure at different scales, and is often dealt with a data-dependent methodology. In this paper, we introduce a general two-step methodology for model-based…

Computation · Statistics 2021-04-22 Etienne Côme , Nicolas Jouvin , Pierre Latouche , Charles Bouveyron

Clustering is a fundamental analysis tool aiming at classifying data points into groups based on their similarity or distance. It has found successful applications in all natural and social sciences, including biology, physics, economics,…

Information Retrieval · Computer Science 2021-02-24 Wen-Bo Xie , Yan-Li Lee , Cong Wang , Duan-Bing Chen , Tao Zhou

A clustering termination procedure which is locally adaptive (with respect to the hierarchical tree of sets representative of the agglomerative merging) is proposed, for agglomerative hierarchical clustering on a set equipped with a…

Machine Learning · Statistics 2022-12-02 Ashlin Richardson , Donald Leckie

A combinatorial cost function for hierarchical clustering was introduced by Dasgupta \cite{dasgupta2016cost}. It has been generalized by Cohen-Addad et al. \cite{cohen2019hierarchical} to a general form named admissible function. In this…

Machine Learning · Computer Science 2021-08-16 Yicheng Pan , Feng Zheng , Bingchen Fan

We consider the neighborhood tree induced by alternating the use of different neighborhood structures within a local search descent. We investigate the issue of designing a search strategy operating at the neighborhood tree level by…

Other Computer Science · Computer Science 2013-01-01 Houda Derbel , Bilel Derbel

Hierarchical clustering based on pairwise similarities is a common tool used in a broad range of scientific applications. However, in many problems it may be expensive to obtain or compute similarities between the items to be clustered.…

Information Theory · Computer Science 2015-03-19 Brian Eriksson , Gautam Dasarathy , Aarti Singh , Robert Nowak

In this paper a variant of the classical hierarchical cluster analysis is reported. This agglomerative (bottom-up) cluster technique is referred to as the Adaptive Mean-Linkage Algorithm. It can be interpreted as a linkage algorithm where…

Methodology · Statistics 2015-02-10 H. M. de Oliveira

Clustering techniques create hierarchal network structures, called clusters, on an otherwise flat network. In a dynamic environment-in terms of node mobility as well as in terms of steadily changing device parameters-the clusterhead…

Distributed, Parallel, and Cluster Computing · Computer Science 2007-06-11 Matthias R. Brust , Adrian Andronache , Steffen Rothkugel