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In this work, we present an ensemble of descriptors for the classification of transmission electron microscopy images of viruses. We propose to combine handcrafted and deep learning approaches for virus image classification. The set of…

Computer Vision and Pattern Recognition · Computer Science 2021-12-28 Loris Nanni , Eugenio De Luca , Marco Ludovico Facin , Gianluca Maguolo

The recent development of metagenomic sequencing makes it possible to sequence microbial genomes including viruses in an environmental sample. Identifying viral sequences from metagenomic data is critical for downstream virus analyses. The…

Genomics · Quantitative Biology 2018-06-21 Jie Ren , Kai Song , Chao Deng , Nathan A. Ahlgren , Jed A. Fuhrman , Yi Li , Xiaohui Xie , Fengzhu Sun

Analyzing a huge amount of malware is a major burden for security analysts. Since emerging malware is often a variant of existing malware, automatically classifying malware into known families greatly reduces a part of their burden.…

Cryptography and Security · Computer Science 2022-10-25 Rikima Mitsuhashi , Takahiro Shinagawa

Automated recognition and classification of bacteria species from microscopic images have significant importance in clinical microbiology. Bacteria classification is usually carried out manually by biologists using different shapes and…

Quantitative Methods · Quantitative Biology 2019-12-19 Muhammed Talo

With the rapid growth of the number of devices on the Internet, malware poses a threat not only to the affected devices but also their ability to use said devices to launch attacks on the Internet ecosystem. Rapid malware classification is…

Cryptography and Security · Computer Science 2021-07-30 Hikmat Farhat , Veronica Rammouz

Identifying viral pathogens and characterizing their transmission is essential to developing effective public health measures in response to a pandemic. Phylogenetics, though currently the most popular tool used to characterize the likely…

Quantitative Methods · Quantitative Biology 2015-05-28 Anil Raj , Michael Dewar , Gustavo Palacios , Raul Rabadan , Chris H. Wiggins

Rapid identification of newly emerging or circulating viruses is an important first step toward managing the public health response to potential outbreaks. A portable virus capture device coupled with label-free Raman Spectroscopy holds the…

In 2022, a group of basic and clinical virologists, bioinformaticians, and evolutionary and structural biologists met in Oxford, UK, to develop a consensus on methodologies used to classify viruses. They concluded that virus taxonomy, which…

Populations and Evolution · Quantitative Biology 2023-09-26 Alexandr A. Ezhov

Nowadays, analysis of Transparent Environmental Microorganism Images (T-EM images) in the field of computer vision has gradually become a new and interesting spot. This paper compares different deep learning classification performance for…

Computer Vision and Pattern Recognition · Computer Science 2021-07-22 Hechen Yang , Chen Li , Jinghua Zhang , Peng Zhao , Ao Chen , Xin Zhao , Tao Jiang , Marcin Grzegorzek

Regular monitoring of the primary particles and purity profiles of a drug product during development and manufacturing processes is essential for manufacturers to avoid product variability and contamination. Transmission electron microscopy…

Computer Vision and Pattern Recognition · Computer Science 2023-11-10 Olivier Rukundo , Andrea Behanova , Riccardo De Feo , Seppo Ronkko , Joni Oja , Jussi Tohka

In recent years, deep learning has made brilliant achievements in Environmental Microorganism (EM) image classification. However, image classification of small EM datasets has still not obtained good research results. Therefore, researchers…

Computer Vision and Pattern Recognition · Computer Science 2022-02-04 Peng Zhao , Chen Li , Md Mamunur Rahaman , Hao Xu , Hechen Yang , Hongzan Sun , Tao Jiang , Marcin Grzegorzek

In order to prevent detection and evade signature-based scanning methods, which are normally exploited by antivirus software, metamorphic viruses use several various obfuscation approaches. They transform their code in new instances as look…

Cryptography and Security · Computer Science 2011-04-19 Babak Bashari Rad , Maslin Masrom

In this paper, we present a novel method of differentiating known from previously unseen malware families. We utilize transfer learning by learning compact file representations that are used for a new classification task between previously…

Cryptography and Security · Computer Science 2019-11-26 Ilay Cordonsky , Ishai Rosenberg , Guillaume Sicard , Eli David

Modern malware evolves various detection avoidance techniques to bypass the state-of-the-art detection methods. An emerging trend to deal with this issue is the combination of image transformation and machine learning techniques to classify…

Cryptography and Security · Computer Science 2019-09-17 Duc-Ly Vu , Trong-Kha Nguyen , Tam V. Nguyen , Tu N. Nguyen , Fabio Massacci , Phu H. Phung

Understanding and extracting the patterns of microscopy images has been a major challenge in the biomedical field. Although trained scientists can locate the proteins of interest within a human cell, this procedure is not efficient and…

Computer Vision and Pattern Recognition · Computer Science 2020-06-09 Hanke Chen

Recording atomic-resolution transmission electron microscopy (TEM) images is becoming increasingly routine. A new bottleneck is then analyzing this information, which often involves time-consuming manual structural identification. We have…

The ICTV develops, refines and maintains a universal virus taxonomy; Order is the highest taxon in the branching hierarchy of recognised viral taxa. Historically, ICTV (sub)committees have classified viruses on the basis of morphological…

Genomics · Quantitative Biology 2018-09-12 T. Wang , M. Herbster , I. S. Mian

In the field of materials science, microscopy is the first and often only accessible method for structural characterization. There is a growing interest in the development of machine learning methods that can automate the analysis and…

Materials Science · Physics 2022-09-28 Shizhao Lu , Brian Montz , Todd Emrick , Arthi Jayaraman

During an infectious disease pandemic, it is critical to share electronic medical records or models (learned from these records) across regions. Applying one region's data/model to another region often have distribution shift issues that…

Machine Learning · Computer Science 2021-03-12 Ye Ye , Andrew Gu

Criminals use malware to disrupt cyber-systems. The number of these malware-vulnerable systems is increasing quickly as common systems, such as vehicles, routers, and lightbulbs, become increasingly interconnected cyber-systems. To address…

Cryptography and Security · Computer Science 2019-10-07 Viktor Zenkov , Jason Laska
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