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In this paper, we propose an optimization selection methodology for the ubiquitous sparse matrix-vector multiplication (SpMV) kernel. We propose two models that attempt to identify the major performance bottleneck of the kernel for every…

Performance · Computer Science 2016-01-12 Athena Elafrou , Georgios Goumas , Nectarios Koziris

Many recent GPUs feature matrix multiplication engines (aka Tensor Core Units or TCUs) that perform small fixed-size matrix-matrix products at very high throughput. They have been used very effectively to speed up dense matrix-matrix…

Performance · Computer Science 2025-11-25 Lizhi Xiang , Omid Asudeh , Gerald Sabin , Aravind Sukumaran-Rajam , P. Sadayappan

Score-debiased kernel density estimation (SD-KDE) achieves improved asymptotic convergence rates over classical KDE, but its use of an empirical score has made it significantly slower in practice. We show that by re-ordering the SD-KDE…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-02-12 Elliot L. Epstein , Rajat Vadiraj Dwaraknath , John Winnicki

Kernel-based clustering algorithm can identify and capture the non-linear structure in datasets, and thereby it can achieve better performance than linear clustering. However, computing and storing the entire kernel matrix occupy so large…

Machine Learning · Computer Science 2020-02-10 Li Chen , Shuisheng Zhou , Jiajun Ma

K-means is a widely used algorithm in clustering, however, its efficiency is primarily constrained by the computational cost of distance computing. Existing implementations suffer from suboptimal utilization of computational units and lack…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-08-09 Shixun Wu , Yitong Ding , Yujia Zhai , Jinyang Liu , Jiajun Huang , Zizhe Jian , Huangliang Dai , Sheng Di , Bryan M. Wong , Zizhong Chen , Franck Cappello

We extend the GenTen tensor decomposition package by introducing an accelerated dense matricized tensor times Khatri-Rao product (MTTKRP), the workhorse kernel for canonical polyadic (CP) tensor decompositions, that is portable and…

Mathematical Software · Computer Science 2025-10-17 Gabriel Kosmacher , Eric T. Phipps , Sivasankaran Rajamanickam

The inference and training stages of Graph Neural Networks (GNNs) are often dominated by the time required to compute a long sequence of matrix multiplications between the sparse graph adjacency matrix and its embedding. To accelerate these…

Data Structures and Algorithms · Computer Science 2024-09-05 João N. F. Alves , Samir Moustafa , Siegfried Benkner , Alexandre P. Francisco , Wilfried N. Gansterer , Luís M. S. Russo

The Kernel Polynomial Method (KPM) is one of the fast diagonalization methods used for simulations of quantum systems in research fields of condensed matter physics and chemistry. The algorithm has a difficulty to be parallelized on a…

Computational Physics · Physics 2011-05-30 Shixun Zhang , Shinichi Yamagiwa , Masahiko Okumura , Seiji Yunoki

Sparse matrix-matrix multiplication (SpGEMM) is a computational primitive that is widely used in areas ranging from traditional numerical applications to recent big data analysis and machine learning. Although many SpGEMM algorithms have…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-06-27 Yusuke Nagasaka , Satoshi Matsuoka , Ariful Azad , Aydın Buluç

This paper introduces sTiles, a GPU-accelerated framework for factorizing sparse structured symmetric matrices. By leveraging tile algorithms for fine-grained computations, sTiles uses a structure-aware task execution flow to handle…

Performance · Computer Science 2025-01-07 Esmail Abdul Fattah , Hatem Ltaief , Havard Rue , David Keyes

Recurrent Neural Networks (RNN) can be difficult to deploy on resource constrained devices due to their size. As a result, there is a need for compression techniques that can significantly compress RNNs without negatively impacting task…

Machine Learning · Computer Science 2019-10-10 Urmish Thakker , Igor Fedorov , Jesse Beu , Dibakar Gope , Chu Zhou , Ganesh Dasika , Matthew Mattina

In recent years, novel AI accelerators have emerged as promising alternatives to GPU for AI model training and inference tasks. One such accelerator, the Cerebras CS-3, achieves strong performance on large model training as well as…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-01 Milan Shah , Sheng Di , Michela Becchi

Top-K SpMV is a key component of similarity-search on sparse embeddings. This sparse workload does not perform well on general-purpose NUMA systems that employ traditional caching strategies. Instead, modern FPGA accelerator cards have a…

Hardware Architecture · Computer Science 2021-03-09 Alberto Parravicini , Luca Giuseppe Cellamare , Marco Siracusa , Marco Domenico Santambrogio

Machine-learning force fields can deliver accurate molecular dynamics (MD) at high computational cost. For SO(3)-equivariant models such as MACE, there is little systematic evidence on whether reduced-precision arithmetic and GPU-optimized…

Machine Learning · Computer Science 2025-10-29 Alexandre Benoit

This paper presents GPU performance optimization and scaling results for inference models of the Sparse Deep Neural Network Challenge 2020. Demands for network quality have increased rapidly, pushing the size and thus the memory…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-09-04 Mert Hidayetoglu , Carl Pearson , Vikram Sharma Mailthody , Eiman Ebrahimi , Jinjun Xiong , Rakesh Nagi , Wen-Mei Hwu

Sparse linear algebra kernels play a critical role in numerous applications, covering from exascale scientific simulation to large-scale data analytics. Offloading linear algebra kernels on one GPU will no longer be viable in these…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-09-19 Jieyang Chen , Chenhao Xie , Jesun S Firoz , Jiajia Li , Shuaiwen Leon Song , Kevin Barker , Mark Raugas , Ang Li

General sparse matrix-matrix multiplication (SpGEMM) is an integral part of many scientific computing, high-performance computing (HPC), and graph analytic applications. This paper presents a new compressed sparse vector (CSV) format for…

Performance · Computer Science 2021-12-21 Erfan Bank Tavakoli , Michael Riera , Masudul Hassan Quraishi , Fengbo Ren

Network pruning can reduce the computation cost of deep neural network (DNN) models. However, sparse models often produce randomly-distributed weights to maintain accuracy, leading to irregular computations. Consequently, unstructured…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-02-19 Cong Guo , Fengchen Xue , Jingwen Leng , Yuxian Qiu , Yue Guan , Weihao Cui , Quan Chen , Minyi Guo

We design and develop a work-efficient multithreaded algorithm for sparse matrix-sparse vector multiplication (SpMSpV) where the matrix, the input vector, and the output vector are all sparse. SpMSpV is an important primitive in the…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-10-26 Ariful Azad , Aydin Buluc

This paper introduces the first low-power hardware accelerator for Spiking Transformers, an emerging alternative to traditional artificial neural networks. By modifying the base Spikformer model to use IAND instead of residual addition, the…

Hardware Architecture · Computer Science 2025-03-26 Bo-Yu Chen , Tian-Sheuan Chang