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Language Models (LMs) have greatly influenced diverse domains. However, their inherent limitation in comprehending 3D molecular structures has considerably constrained their potential in the biomolecular domain. To bridge this gap, we focus…

Machine Learning · Computer Science 2024-03-19 Sihang Li , Zhiyuan Liu , Yanchen Luo , Xiang Wang , Xiangnan He , Kenji Kawaguchi , Tat-Seng Chua , Qi Tian

Referring Expression Comprehension (REC) is a crucial cross-modal task that objectively evaluates the capabilities of language understanding, image comprehension, and language-to-image grounding. Consequently, it serves as an ideal testing…

Computer Vision and Pattern Recognition · Computer Science 2025-01-14 Junzhuo Liu , Xuzheng Yang , Weiwei Li , Peng Wang

We introduce a new arbitrary-shaped text detection approach named ReLaText by formulating text detection as a visual relationship detection problem. To demonstrate the effectiveness of this new formulation, we start from using a "link"…

Computer Vision and Pattern Recognition · Computer Science 2020-03-17 Chixiang Ma , Lei Sun , Zhuoyao Zhong , Qiang Huo

Molecule design is a multifaceted approach that leverages computational methods and experiments to optimize molecular properties, fast-tracking new drug discoveries, innovative material development, and more efficient chemical processes.…

Computation and Language · Computer Science 2024-08-23 Sakhinana Sagar Srinivas , Venkataramana Runkana

Large Language Models can develop reasoning capabilities through online fine-tuning with rule-based rewards. However, recent studies reveal a critical constraint: reinforcement learning succeeds only when the base model already assigns…

A fundamental skill among human developers is the ability to understand and reason about program execution. As an example, a programmer can mentally simulate code execution in natural language to debug and repair code (aka. rubber duck…

Machine Learning · Computer Science 2024-04-24 Ansong Ni , Miltiadis Allamanis , Arman Cohan , Yinlin Deng , Kensen Shi , Charles Sutton , Pengcheng Yin

Reaction diagram parsing (RxnDP) is critical for extracting chemical synthesis information from literature. Although recent Vision-Language Models (VLMs) have emerged as a promising paradigm to automate this complex visual reasoning task,…

Computer Vision and Pattern Recognition · Computer Science 2026-03-18 Jiahe Song , Chuang Wang , Yinfan Wang , Hao Zheng , Rui Nie , Bowen Jiang , Xingjian Wei , Junyuan Gao , Yubin Wang , Bin Wang , Lijun Wu , Jiang Wu , Qian Yu , Conghui He

How to effectively represent molecules is a long-standing challenge for molecular property prediction and drug discovery. This paper studies this problem and proposes to incorporate chemical domain knowledge, specifically related to…

Machine Learning · Computer Science 2023-05-04 Liang Zeng , Lanqing Li , Jian Li

Accurately predicting chemical reaction outcomes and potential byproducts is a fundamental task of modern chemistry, enabling the efficient design of synthetic pathways and driving progress in chemical science. Reaction mechanism, which…

Chemical Physics · Physics 2025-03-14 Shuan Chen , Kye Sung Park , Taewan Kim , Sunkyu Han , Yousung Jung

Visual texts embedded in videos carry rich semantic information, which is crucial for both holistic video understanding and fine-grained reasoning about local human actions. However, existing video understanding benchmarks largely overlook…

Computer Vision and Pattern Recognition · Computer Science 2025-11-04 Zhoufaran Yang , Yan Shu , Jing Wang , Zhifei Yang , Yan Zhang , Yu Li , Keyang Lu , Gangyan Zeng , Shaohui Liu , Yu Zhou , Nicu Sebe

Artificial intelligence and machine learning have shown great promise in their ability to accelerate novel materials discovery. As researchers and domain scientists seek to unify and consolidate chemical knowledge, the case for models with…

Neural networks have recently achieved human-level performance on various challenging natural language processing (NLP) tasks, but it is notoriously difficult to understand why a neural network produced a particular prediction. In this…

Computation and Language · Computer Science 2020-05-01 Sharan Narang , Colin Raffel , Katherine Lee , Adam Roberts , Noah Fiedel , Karishma Malkan

In recent years, patch representation learning has emerged as a necessary research direction for exploiting the capabilities of machine learning in software generation. These representations have driven significant performance enhancements…

Software Engineering · Computer Science 2024-04-02 Xunzhu Tang , Zhenghan Chen , Saad Ezzini , Haoye Tian , Jacques Klein , Tegawende F. Bissyande

With the widespread use of toxic language online, platforms are increasingly using automated systems that leverage advances in natural language processing to automatically flag and remove toxic comments. However, most automated systems --…

Human-Computer Interaction · Computer Science 2021-02-11 Austin P Wright , Omar Shaikh , Haekyu Park , Will Epperson , Muhammed Ahmed , Stephane Pinel , Duen Horng Chau , Diyi Yang

Text detection, the key technology for understanding scene text, has become an attractive research topic. For detecting various scene texts, researchers propose plenty of detectors with different advantages: detection-based models enjoy…

Computer Vision and Pattern Recognition · Computer Science 2022-01-25 Chuang Yang , Mulin Chen , Yuan Yuan , Qi Wang

We describe a fully data driven model that learns to perform a retrosynthetic reaction prediction task, which is treated as a sequence-to-sequence mapping problem. The end-to-end trained model has an encoder-decoder architecture that…

Recent work on speech representation models jointly pre-trained with text has demonstrated the potential of improving speech representations by encoding speech and text in a shared space. In this paper, we leverage such shared…

Computation and Language · Computer Science 2023-10-10 Chung-Ming Chien , Mingjiamei Zhang , Ju-Chieh Chou , Karen Livescu

Performance prediction is a method to estimate the performance of Language Models (LMs) on various Natural Language Processing (NLP) tasks, mitigating computational costs associated with model capacity and data for fine-tuning. Our paper…

Computation and Language · Computer Science 2024-12-17 David Anugraha , Genta Indra Winata , Chenyue Li , Patrick Amadeus Irawan , En-Shiun Annie Lee

The current pretraining paradigm for large language models relies on massive compute and internet-scale raw text, creating a significant barrier to foundational research. In contrast, biological systems demonstrate highly sample-efficient…

Computation and Language · Computer Science 2026-05-21 Guan Wang , Changling Liu , Chenyu Wang , Cai Zhou , Yuhao Sun , Yifei Wu , Shuai Zhen , Luca Scimeca , Yasin Abbasi Yadkori

Motivation: The development of novel compounds targeting proteins of interest is one of the most important tasks in the pharmaceutical industry. Deep generative models have been applied to targeted molecular design and have shown promising…

Machine Learning · Computer Science 2022-09-05 Gökçe Uludoğan , Elif Ozkirimli , Kutlu O. Ulgen , Nilgün Karalı , Arzucan Özgür