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This paper critically re-evaluates LLMs' role in causal discovery and argues against their direct involvement in determining causal relationships. We demonstrate that LLMs' autoregressive, correlation-driven modeling inherently lacks the…

Machine Learning · Computer Science 2025-06-03 Xingyu Wu , Kui Yu , Jibin Wu , Kay Chen Tan

Genes, proteins and other biological entities influence one another via causal molecular networks. Causal relationships in such networks are mediated by complex and diverse mechanisms, through latent variables, and are often specific to…

Machine Learning · Computer Science 2025-03-07 Izzy Newsham , Luka Kovačević , Richard Moulange , Nan Rosemary Ke , Sach Mukherjee

Large language models have been extensively studied as neural knowledge bases for their knowledge access, editability, reasoning, and explainability. However, few works focus on the structural patterns of their knowledge. Motivated by this…

Computation and Language · Computer Science 2025-05-28 Utkarsh Sahu , Zhisheng Qi , Yongjia Lei , Ryan A. Rossi , Franck Dernoncourt , Nesreen K. Ahmed , Mahantesh M Halappanavar , Yao Ma , Yu Wang

Large Language Models (LLMs) are optimized to produce distributionally plausible continuations rather than to explicitly verify whether generated propositions are entailed by source documents. This inductive bias enables generalization, but…

Computation and Language · Computer Science 2026-05-25 Paul Landes , Pranav Herur , Adam Cross , Jimeng Sun

The ability to robustly identify causal relationships is essential for autonomous decision-making and adaptation to novel scenarios. However, accurately inferring causal structure requires integrating both world knowledge and abstract…

Machine Learning · Computer Science 2025-06-17 Khurram Yamin , Shantanu Gupta , Gaurav R. Ghosal , Zachary C. Lipton , Bryan Wilder

Integrating large language models (LLMs) with knowledge graphs derived from domain-specific data represents an important advancement towards more powerful and factual reasoning. As these models grow more capable, it is crucial to enable…

Artificial Intelligence · Computer Science 2024-04-19 Stefan Dernbach , Khushbu Agarwal , Alejandro Zuniga , Michael Henry , Sutanay Choudhury

Recent advances in test-time scaling have enabled Large Language Models (LLMs) to display sophisticated reasoning abilities via extended Chain-of-Thought (CoT) generation. Despite their potential, these Reasoning LLMs (RLMs) often…

Computation and Language · Computer Science 2025-05-21 Zhen Xiong , Yujun Cai , Zhecheng Li , Yiwei Wang

Large language models ($\textbf{LLMs}$) have emerged as a powerful method for discovery. Instead of utilizing numerical data, LLMs utilize associated variable $\textit{semantic metadata}$ to predict variable relationships. Simultaneously,…

Machine Learning · Computer Science 2025-04-15 Alex Havrilla , David Alvarez-Melis , Nicolo Fusi

Estimating individualized treatment effects from observational data presents a persistent challenge due to unmeasured confounding and structural bias. Causal Machine Learning (causal ML) methods, such as causal trees and doubly robust…

Machine Learning · Computer Science 2025-08-12 Po-Han Lee , Yu-Cheng Lin , Chan-Tung Ku , Chan Hsu , Pei-Cing Huang , Ping-Hsun Wu , Yihuang Kang

Community detection in social network graphs plays a vital role in uncovering group dynamics, influence pathways, and the spread of information. Traditional methods focus primarily on graph structural properties, but recent advancements in…

Social and Information Networks · Computer Science 2025-08-01 Ekta Gujral , Apurva Sinha

Traditional causal discovery methods often depend on strong, untestable assumptions, making them unreliable in real-world applications. In this context, Large Language Models (LLMs) have emerged as a promising alternative for extracting…

Artificial Intelligence · Computer Science 2026-03-31 Federico Baldo , Simon Ferreira , Charles K. Assaad

Causal discovery (CD) plays a pivotal role in numerous scientific fields by clarifying the causal relationships that underlie phenomena observed in diverse disciplines. Despite significant advancements in CD algorithms that enhance bias and…

Machine Learning · Computer Science 2025-03-25 Khadija Zanna , Akane Sano

Understanding the causal relationships that underlie a system is a fundamental prerequisite to accurate decision-making. In this work, we explore how expert knowledge can be used to improve the data-driven identification of causal graphs,…

Artificial Intelligence · Computer Science 2023-07-06 Stephanie Long , Alexandre Piché , Valentina Zantedeschi , Tibor Schuster , Alexandre Drouin

With the rapid advancement of large language models (LLMs), classic graph learning tasks have greatly benefited from LLMs, including improved encoding of textual features, more efficient construction of graphs from text, and enhanced…

Artificial Intelligence · Computer Science 2026-05-05 Xiyuan Wang , Yi Hu , Yanbo Wang , Chuan Shi , Muhan Zhang

Recommendation systems aim to provide users with relevant suggestions, but often lack interpretability and fail to capture higher-level semantic relationships between user behaviors and profiles. In this paper, we propose a novel approach…

Information Retrieval · Computer Science 2024-01-26 Yan Wang , Zhixuan Chu , Xin Ouyang , Simeng Wang , Hongyan Hao , Yue Shen , Jinjie Gu , Siqiao Xue , James Y Zhang , Qing Cui , Longfei Li , Jun Zhou , Sheng Li

Large language models (LLMs) have excelled in various natural language processing tasks, but challenges in interpretability and trustworthiness persist, limiting their use in high-stakes fields. Causal discovery offers a promising approach…

Artificial Intelligence · Computer Science 2024-06-10 Wei Zhou , Hong Huang , Guowen Zhang , Ruize Shi , Kehan Yin , Yuanyuan Lin , Bang Liu

Large language models (LLMs) offer the potential to automate a large number of tasks that previously have not been possible to automate, including some in science. There is considerable interest in whether LLMs can automate the process of…

Econometrics · Economics 2024-12-17 Nick Huntington-Klein , Eleanor J. Murray

Geometric analyses of large language model (LLM) representations reveal structured variation across depth but remain fundamentally correlational with respect to token prediction formation. Meanwhile, causal interventions expose…

Machine Learning · Computer Science 2026-05-27 Shahar Haim , Daniel C McNamee

Large language models (LLMs) have recently demonstrated impressive capabilities across a range of reasoning and generation tasks. However, research studies have shown that LLMs lack the ability to identify causal relationships, a…

Machine Learning · Computer Science 2025-11-21 Juncheng Dong , Yiling Liu , Ahmed Aloui , Vahid Tarokh , David Carlson

The role of large language models (LLMs) in enterprise modeling has recently started to shift from academic research to that of industrial applications. Thereby, LLMs represent a further building block for the machine-supported generation…

Multiagent Systems · Computer Science 2025-01-08 Benedikt Reitemeyer , Hans-Georg Fill
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