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A macroscopic theory for describing cellular states during steady-growth is presented, which is based on the consistency between cellular growth and molecular replication, as well as the robustness of phenotypes against perturbations.…

Populations and Evolution · Quantitative Biology 2021-02-08 Kunihiko Kaneko , Chikara Furusawa

In this work, we demonstrate that key aspects of the dynamical behavior of coral reefs at the macro scale, which evolve over time scales of centuries, can be accurately described using a model that integrates a few fundamental ecological…

Populations and Evolution · Quantitative Biology 2025-01-20 Miguel Álvarez-Alegría , Pablo Moreno-Spiegelberg , Manuel A. Matías , Damià Gomila

Vector-borne diseases often infect multiple host species, increasing the likelihood of disease persistence due to the presence of multiple reservoirs. Vector biting patterns and feeding preferences can shift in response to selective…

Populations and Evolution · Quantitative Biology 2026-05-01 Shravani Shetgaonkar , Anupama Sharma

This paper presents a probabilistic model for reasoning about the state of a system as it changes over time, both due to exogenous and endogenous influences. Our target domain is a class of medical prediction problems that are neither so…

Artificial Intelligence · Computer Science 2013-02-21 Steve Hanks , David Madigan , Jonathan Gavrin

Collective behavior of bacterial colonies plays critical roles in adaptability, survivability, biofilm expansion and infection. We employ an individual-based model of an interstitial biofilm to study emergent pattern formation based on the…

Adaptation and Self-Organizing Systems · Physics 2017-02-01 Cameron Zachreson , Christian Wolff , Cynthia B. Whitchurch , Milos Toth

Dynamic models of paradigm change can elucidate how the simplest of processes may lead to unexpected outcomes, and thereby can reveal new potential explanations for observed linguistic phenomena. Ackerman & Malouf (2015) present a model in…

Computation and Language · Computer Science 2021-11-17 Erich R. Round , Sacha Beniamine , Louise Esher

This paper gives an introduction to rule-based modelling applied to topics in infectious diseases. Rule-based models generalise reaction-based models with reagents that have internal state and may be bound together to form complexes, as in…

Populations and Evolution · Quantitative Biology 2021-08-10 William Waites , Matteo Cavaliere , David Manheim , Jasmina Panovska-Griffiths , Vincent Danos

We study collective processes for an electron beam propagating through a background plasma using simulations and analytical theory. A new regime where the instability of a Langmuir wave packet can grow locally much faster than ion frequency…

Plasma Physics · Physics 2022-10-05 Haomin Sun , Jian Chen , Igor D. Kaganovich , Alexander Khrabrov , Dmytro Sydorenko

We consider a nonlocal Fisher-KPP equation that models a population structured in space and in phenotype. The population lives in a heterogeneous periodic environment: the diffusion coefficient, the mutation coefficient and the fitness of…

Analysis of PDEs · Mathematics 2024-10-28 Nathanaël Boutillon

We study a moving boundary model of non-conserved interface growth that implements the interplay between diffusive matter transport and aggregation kinetics at the interface. Conspicuous examples are found in thin film production by…

Statistical Mechanics · Physics 2009-11-13 Matteo Nicoli , Mario Castro , Rodolfo Cuerno

Estimating risk factors for incidence of a disease is crucial for understanding its etiology. For diseases caused by enteric pathogens, off-the-shelf statistical model-based approaches do not consider the biological mechanisms through which…

Methodology · Statistics 2024-10-25 Daniel K. Sewell , Kelly K. Baker

In the present work, we explore the influence of habitat complexity on the activities of prey and predator of a spatio-temporal system by incorporating self diffusion. First we modify the Rosenzweig-MacArthur predator-prey model by…

Pattern Formation and Solitons · Physics 2020-10-30 Debaldev Jana , Saikat Batabyal , M. Lakshmanan

Viral kinetics have been extensively studied in the past through the use of spatially well-mixed ordinary differential equations describing the time evolution of the diseased state. However, emerging spatial structures such as localized…

Cell Behavior · Quantitative Biology 2024-04-02 Catherine Beauchemin

The geographical pattern of human dialects is a result of history. Here, we formulate a simple spatial model of language change which shows that the final result of this historical evolution may, to some extent, be predictable. The model…

Physics and Society · Physics 2017-07-26 James Burridge

Evolutionary game dynamics in structured populations are strongly affected by updating rules. Previous studies usually focus on imitation-based rules, which rely on payoff information of social peers. Recent behavioral experiments suggest…

Populations and Evolution · Quantitative Biology 2018-10-02 Lei Zhou , Bin Wu , Jinming Du , Long Wang

Coffee leaf rust (CLR) severely affects coffee production worldwide, leading to reduced yields and economic losses. To reduce the cost of control, small-scale farmers often only apply control measures once a noticeable level of infection is…

Populations and Evolution · Quantitative Biology 2025-04-10 Clotilde Djuikem , Julien Arino

The acid-mediated tumor invasion hypothesis proposes that altered glucose metabolism exhibited by the vast majority of tumors leads to increased acid (H+ ion) production which subsequently facilitates tumor invasion [1-3]. The…

Tissues and Organs · Quantitative Biology 2019-06-10 Ahmed M. Fouad

Pattern formation analysis of eco-epidemiological models with cannibalism and disease has been less explored in the literature. Therefore, motivated by this, we have proposed a diffusive eco-epidemiological model and performed pattern…

Analysis of PDEs · Mathematics 2021-03-09 Nitu Kumari , Vikas Kumar , Ravi P. Agarwal

There has been interest in the interactions between infectious disease dynamics and behaviour for most of the history of mathematical epidemiology. This has included consideration of which mathematical models best capture each phenomenon,…

Populations and Evolution · Quantitative Biology 2025-12-09 Matthew Ryan , Roslyn I. Hickson , Edward M. Hill , Thomas House , Valerie Isham , Dongni Zhang , Mick G. Roberts

The endogenous adaptation of agents, that may adjust their local contact network in response to the risk of being infected, can have the perverse effect of increasing the overall systemic infectiveness of a disease. We study a dynamical…

General Economics · Economics 2021-03-29 Alessio Muscillo , Paolo Pin , Tiziano Razzolini