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We introduce FDApy, an open-source Python package for the analysis of functional data. The package provides tools for the representation of (multivariate) functional data defined on different dimensional domains and for functional data that…

Mathematical Software · Computer Science 2025-03-10 Steven Golovkine

Outlier detection is one of the standard exploratory analysis tasks in functional data analysis. We present the R package fdaoutlier which contains implementations of some of the latest techniques for detecting functional outliers. The…

Computation · Statistics 2021-10-15 Oluwasegun Ojo , Rosa E. Lillo , Antonio Fernández Anta

We present a Mathematica package designed to automatize the expansion of QFT transition amplitudes calculated in the mass eigenstates basis (i.e. expressed in terms of physical masses and mixing matrices) into series of "mass insertions",…

High Energy Physics - Phenomenology · Physics 2016-03-23 Janusz Rosiek

The generation of input files for density functional theory (DFT) programs must often be manually done by researchers. If one wishes to produce a maximally localized wannier functions (MLWFs) the calculation consists of several separate…

Computational Physics · Physics 2020-06-24 Christopher Sims

Partial differential equations describing the dynamics of physical systems rarely have closed-form solutions. Fourier spectral methods, which use Fast Fourier Transforms (FFTs) to approximate solutions, are a common approach to solving…

We present the Matlab toolbox MacaulayLab, which implements numerical linear algebra algorithms for solving multivariate polynomial systems and rectangular multiparameter eigenvalue problems. Its structure and functionality are the result…

Mathematical Software · Computer Science 2026-05-21 Christof Vermeersch , Bart De Moor

In this present investigation, we introduce the new class R of bi-univalent functions defined by using the Tremblay fractional derivative operator. Additionally, we use the Faber polynomial expansions and Fibonacci numbers to derive bounds…

Complex Variables · Mathematics 2019-01-23 Sahsene Altinkaya , Samaneh G. Hamidi , Jay M. Jahangiri , Sibel Yalcin

FCMpy is an open source package in Python for building and analyzing Fuzzy Cognitive Maps. More specifically, the package allows 1) deriving fuzzy causal weights from qualitative data, 2) simulating the system behavior, 3) applying machine…

Mathematical Software · Computer Science 2022-11-03 Samvel Mkhitaryan , Philippe J. Giabbanelli , Maciej K. Wozniak , Gonzalo Napoles , Nanne K. de Vries , Rik Crutzen

This introduces Rees algebras and some of their uses with illustrations via version 2.0 of the Macaulay2 package ReesAlgebra.m2.

Commutative Algebra · Mathematics 2017-09-05 David Eisenbud

The Macaulay2 package Cremona performs some computations on rational and birational maps between irreducible projective varieties. For instance, it provides methods to compute degrees and projective degrees of rational maps without any…

Algebraic Geometry · Mathematics 2018-08-28 Giovanni Staglianò

Incremental computations attempt to exploit input similarities over time, reusing work that is unaffected by input changes. To maximize this reuse in a general-purpose programming setting, programmers need a mechanism to identify dynamic…

Programming Languages · Computer Science 2021-03-24 Matthew A. Hammer , Jana Dunfield , Kyle Headley , Monal Narasimhamurthy , Dimitrios J. Economou

We present the $\textit{NumericalImplicitization}$ package for $\textit{Macaulay2}$, which allows for user-friendly computation of the invariants of the image of a polynomial map, such as dimension, degree, and Hilbert function values. This…

Algebraic Geometry · Mathematics 2019-10-16 Justin Chen , Joe Kileel

We use the well-known observation that the solutions of Jacobi's differential equation can be represented via non-oscillatory phase and amplitude functions to develop a fast algorithm for computing multi-dimensional Jacobi polynomial…

Numerical Analysis · Mathematics 2019-09-13 James Bremer , Qiyuan Pang , Haizhao Yang

We describe the qFunctions Mathematica package for $q$-series and partition theory applications. This package includes both experimental and symbolic tools. The experimental set of elements includes guessers for $q$-shift equations and…

Symbolic Computation · Computer Science 2019-10-29 Jakob Ablinger , Ali K. Uncu

Probabilistic programming provides the means to represent and reason about complex probabilistic models using programming language constructs. Even simple probabilistic programs can produce models with infinitely many variables. Factored…

Artificial Intelligence · Computer Science 2015-09-14 Avi Pfeffer , Brian Ruttenberg , Amy Sliva , Michael Howard , Glenn Takata

We introduce a new Macaulay2 package, Nauty, which gives access to powerful methods on graphs provided by the software nauty by Brendan McKay. The primary motivation for accessing nauty is to determine if two graphs are isomorphic. We also…

Combinatorics · Mathematics 2011-04-27 David Cook

We introduce the Macaulay2 package BooleanGB, which computes a Gr\"obner basis for Boolean polynomials using a binary representation rather than symbolic. We compare the runtime of several Boolean models from systems in biology and give an…

Algebraic Geometry · Mathematics 2010-10-14 Franziska Hinkelmann , Elizabeth Arnold

We present Bill2d, a modern and efficient C++ package for classical simulations of two-dimensional Hamiltonian systems. Bill2d can be used for various billiard and diffusion problems with one or more charged particles with interactions,…

Computational Physics · Physics 2016-02-22 Janne Solanpää , Perttu Luukko , Esa Räsänen

We present a publicly available software for exponential integrators that computes the $\varphi_l(z)$ functions using polynomial interpolation. The interpolation method at Leja points have recently been shown to be competitive with the…

Numerical Analysis · Mathematics 2023-01-23 Pranab J. Deka , Lukas Einkemmer , Mayya Tokman

We describe the Macaulay2 package "A1BrouwerDegrees" for computing local and global $\mathbb{A}^1$-Brouwer degrees and studying symmetric bilinear forms over the complex numbers, the real numbers, the rational numbers, and finite fields of…