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Higher-order networks, naturally described as hypergraphs, are essential for modeling real-world systems involving interactions among three or more entities. Stochastic block models offer a principled framework for characterizing mesoscale…

Social and Information Networks · Computer Science 2025-11-27 Kazuki Nakajima , Yuya Sasaki , Takeaki Uno , Masaki Aida

Graph Neural Networks (GNNs) have demonstrated significant success in learning from graph-structured data but often struggle on heterophilous graphs, where connected nodes differ in features or class labels. This limitation arises from…

Machine Learning · Computer Science 2025-09-30 Zhongtian Sun , Anoushka Harit , Alexandra Cristea , Christl A. Donnelly , Pietro Liò

Graph Neural Networks (GNNs) have achieved state-of-the-art results on many graph analysis tasks such as node classification and link prediction. However, important unsupervised problems on graphs, such as graph clustering, have proved more…

Machine Learning · Computer Science 2023-06-02 Anton Tsitsulin , John Palowitch , Bryan Perozzi , Emmanuel Müller

Graphs are powerful representations for relations among objects, which have attracted plenty of attention. A fundamental challenge for graph learning is how to train an effective Graph Neural Network (GNN) encoder without labels, which are…

Machine Learning · Computer Science 2022-10-19 Baoyu Jing , Shengyu Feng , Yuejia Xiang , Xi Chen , Yu Chen , Hanghang Tong

Multi-omics data is increasingly being utilized to advance computational methods for cancer classification. However, multi-omics data integration poses significant challenges due to the high dimensionality, data complexity, and distinct…

Genomics · Quantitative Biology 2024-10-10 Fadi Alharbi , Aleksandar Vakanski , Boyu Zhang , Murtada K. Elbashir , Mohanad Mohammed

There are various approaches to graph learning for data clustering, incorporating different spectral and structural constraints through diverse graph structures. Some methods rely on bipartite graph models, where nodes are divided into two…

Machine Learning · Computer Science 2025-05-14 Amirhossein Javaheri , Daniel P. Palomar

Multi-label node classification is an important yet under-explored domain in graph mining as many real-world nodes belong to multiple categories rather than just a single one. Although a few efforts have been made by utilizing Graph…

Machine Learning · Computer Science 2025-06-18 Yuanchen Bei , Weizhi Chen , Hao Chen , Sheng Zhou , Carl Yang , Jiapei Fan , Longtao Huang , Jiajun Bu

Clustering techniques attempt to group objects with similar properties into a cluster. Clustering the nodes of an attributed graph, in which each node is associated with a set of feature attributes, has attracted significant attention.…

Computer Vision and Pattern Recognition · Computer Science 2020-09-15 Chaojie Ji , Hongwei Chen , Ruxin Wang , Yunpeng Cai , Hongyan Wu

Graph condensation (GC) has gained significant attention for its ability to synthesize smaller yet informative graphs. However, existing studies often overlook the robustness of GC in scenarios where the original graph is corrupted. In such…

Machine Learning · Computer Science 2025-11-25 Jiayi Luo , Qingyun Sun , Beining Yang , Haonan Yuan , Xingcheng Fu , Yanbiao Ma , Jianxin Li , Philip S. Yu

Accurate cell type annotation is a crucial step in analyzing single-cell RNA sequencing (scRNA-seq) data, which provides valuable insights into cellular heterogeneity. However, due to the high dimensionality and prevalence of zero elements…

Machine Learning · Computer Science 2025-08-14 Huifa Li , Jie Fu , Xinlin Zhuang , Haolin Yang , Xinpeng Ling , Tong Cheng , Haochen xue , Imran Razzak , Zhili Chen

Graph representation learning has attracted a surge of interest recently, whose target at learning discriminant embedding for each node in the graph. Most of these representation methods focus on supervised learning and heavily depend on…

Machine Learning · Computer Science 2021-07-07 Pengpeng Shao , Tong Liu , Dawei Zhang , Jianhua Tao , Feihu Che , Guohua Yang

Within the context of Graph Signal Processing (GSP), Graph Learning (GL) is concerned with the inference of the graph's underlying structure from nodal observations. However, real-world data often contains diverse information, necessitating…

Signal Processing · Electrical Eng. & Systems 2023-11-08 Mohamad H. Alizade , Aref Einizade , Jhony H. Giraldo

We investigate the community detection problem on graphs in the existence of multiple edge types. Our main motivation is that similarity between objects can be defined by many different metrics and aggregation of these metrics into a single…

Social and Information Networks · Computer Science 2011-03-16 Matthew Rocklin , Ali Pinar

Coarse-grained (CG) molecular dynamics (MD) simulations can simulate large molecular complexes over extended timescales by reducing degrees of freedom. A critical step in CG modeling is the selection of the CG mapping algorithm, which…

Soft Condensed Matter · Physics 2025-07-23 Soumya Mondal , Subhanu Halder , Debarchan Basu , Sandeep Kumar , Tarak Karmakar

We continue the line of research on graph compression started with WebGraph, but we move our focus to the compression of social networks in a proper sense (e.g., LiveJournal): the approaches that have been used for a long time to compress…

Data Structures and Algorithms · Computer Science 2011-10-17 Paolo Boldi , Marco Rosa , Massimo Santini , Sebastiano Vigna

While traditional federated learning (FL) typically focuses on a star topology where clients are directly connected to a central server, real-world distributed systems often exhibit hierarchical architectures. Hierarchical FL (HFL) has…

Machine Learning · Computer Science 2024-12-18 Wenzhi Fang , Dong-Jun Han , Evan Chen , Shiqiang Wang , Christopher G. Brinton

Graph Transformers (GTs) have made remarkable achievements in graph-level tasks. However, most existing works regard graph structures as a form of guidance or bias for enhancing node representations, which focuses on node-central…

Machine Learning · Computer Science 2024-12-10 Xiaorui Qi , Qijie Bai , Yanlong Wen , Haiwei Zhang , Xiaojie Yuan

The defect morphology is an essential aspect of the evolution of crystals' microstructure and its response to stress. Existing methods either only report defect concentration or characterize only some of the defect morphologies. The need…

Computational Physics · Physics 2021-04-21 Utkarsh Bhardwaj , Andrea E. Sand , Manoj Warrier

Timestamped relational datasets consisting of records between pairs of entities are ubiquitous in data and network science. For applications like peer-to-peer communication, email, social network interactions, and computer network security,…

Data Structures and Algorithms · Computer Science 2023-11-20 Michael Ostroski , Geoffrey Sanders , Trevor Steil , Roger Pearce

Multi-graph multi-label learning (\textsc{Mgml}) is a supervised learning framework, which aims to learn a multi-label classifier from a set of labeled bags each containing a number of graphs. Prior techniques on the \textsc{Mgml} are…

Machine Learning · Computer Science 2020-12-22 Yejiang Wang , Yuhai Zhao , Zhengkui Wang , Chengqi Zhang
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