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Molecule inverse folding has been a long-standing challenge in chemistry and biology, with the potential to revolutionize drug discovery and material science. Despite specified models have been proposed for different small- or…

Artificial Intelligence · Computer Science 2024-05-30 Zhangyang Gao , Jue Wang , Cheng Tan , Lirong Wu , Yufei Huang , Siyuan Li , Zhirui Ye , Stan Z. Li

Pretraining 3D encoders by aligning with Contrastive Language Image Pretraining (CLIP) has emerged as a promising direction to learn generalizable representations for 3D scene understanding. In this paper, we propose UniScene3D, a…

Computer Vision and Pattern Recognition · Computer Science 2026-04-06 Ye Mao , Weixun Luo , Ranran Huang , Junpeng Jing , Krystian Mikolajczyk

Face analysis tasks have a wide range of applications, but the universal facial representation has only been explored in a few works. In this paper, we explore high-performance pre-training methods to boost the face analysis tasks such as…

Computer Vision and Pattern Recognition · Computer Science 2023-09-08 Yue Wang , Jinlong Peng , Jiangning Zhang , Ran Yi , Liang Liu , Yabiao Wang , Chengjie Wang

Deep learning is changing many areas in molecular physics, and it has shown great potential to deliver new solutions to challenging molecular modeling problems. Along with this trend arises the increasing demand of expressive and versatile…

Machine Learning · Computer Science 2023-12-27 Jun Zhang , Yao-Kun Lei , Yaqiang Zhou , Yi Isaac Yang , Yi Qin Gao

Recent advancements in biology and chemistry have leveraged multi-modal learning, integrating molecules and their natural language descriptions to enhance drug discovery. However, current pre-training frameworks are limited to two…

Machine Learning · Computer Science 2025-02-05 Teng Xiao , Chao Cui , Huaisheng Zhu , Vasant G. Honavar

Contrastive learning has achieved great success in skeleton-based representation learning recently. However, the prevailing methods are predominantly negative-based, necessitating additional momentum encoder and memory bank to get negative…

Computer Vision and Pattern Recognition · Computer Science 2024-12-17 Wanjiang Weng , Hongsong Wang , Junbo Wang , Lei He , Guosen Xie

The prior self-supervised learning researches mainly select image-level instance discrimination as pretext task. It achieves a fantastic classification performance that is comparable to supervised learning methods. However, with degraded…

Computer Vision and Pattern Recognition · Computer Science 2022-05-11 Bing Zhao , Jun Li , Hong Zhu

The superior performance of some of today's state-of-the-art deep learning models is to some extent owed to extensive (self-)supervised contrastive pretraining on large-scale datasets. In contrastive learning, the network is presented with…

Machine Learning · Computer Science 2022-07-20 Shervin Ardeshir , Navid Azizan

We present a systematic evaluation of representation learning objectives for particle physics within a unified framework. Our study employs a shared transformer-based particle-cloud encoder with standardized preprocessing, matched sampling,…

Machine Learning · Computer Science 2025-11-18 Michael Chen , Raghav Kansal , Abhijith Gandrakota , Zichun Hao , Jennifer Ngadiuba , Maria Spiropulu

Foundational models are trained on extensive datasets to capture the general trends of a domain. However, in medical imaging, the scarcity of data makes pre-training for every domain, modality, or task challenging. Continual learning offers…

Image and Video Processing · Electrical Eng. & Systems 2025-08-20 Mohammad Areeb Qazi , Munachiso S Nwadike , Ibrahim Almakky , Mohammad Yaqub , Numan Saeed

Contrastive learning is among the most successful methods for visual representation learning, and its performance can be further improved by jointly performing clustering on the learned representations. However, existing methods for joint…

Computer Vision and Pattern Recognition · Computer Science 2022-09-16 Shunjie-Fabian Zheng , JaeEun Nam , Emilio Dorigatti , Bernd Bischl , Shekoofeh Azizi , Mina Rezaei

Recent works have shown the promise of learning pre-trained models for 3D molecular representation. However, existing pre-training models focus predominantly on equilibrium data and largely overlook off-equilibrium conformations. It is…

Chemical Physics · Physics 2023-08-30 Rui Feng , Qi Zhu , Huan Tran , Binghong Chen , Aubrey Toland , Rampi Ramprasad , Chao Zhang

Recently, much progress has been made for self-supervised action recognition. Most existing approaches emphasize the contrastive relations among videos, including appearance and motion consistency. However, two main issues remain for…

Computer Vision and Pattern Recognition · Computer Science 2022-04-28 Guanhong Wang , Keyu Lu , Yang Zhou , Zhanhao He , Gaoang Wang

The impressive performance of GPT-3 using natural language prompts and in-context learning has inspired work on better fine-tuning of moderately-sized models under this paradigm. Following this line of work, we present a contrastive…

Computation and Language · Computer Science 2022-05-04 Yiren Jian , Chongyang Gao , Soroush Vosoughi

Natural products, as metabolites from microorganisms, animals, or plants, exhibit diverse biological activities, making them crucial for drug discovery. Nowadays, existing deep learning methods for natural products research primarily rely…

Quantitative Methods · Quantitative Biology 2026-05-11 Yuheng Ding , Bo Qiang , Shaoning Li , Yiran Zhou , Jie Yu , Qi Li , Cheng Shi , Liangren Zhang , Yusong Wang , Nanning Zheng , Zhenming Liu

We introduce COLA, a self-supervised pre-training approach for learning a general-purpose representation of audio. Our approach is based on contrastive learning: it learns a representation which assigns high similarity to audio segments…

Sound · Computer Science 2020-10-22 Aaqib Saeed , David Grangier , Neil Zeghidour

Machine unlearning is a complex process that necessitates the model to diminish the influence of the training data while keeping the loss of accuracy to a minimum. Despite the numerous studies on machine unlearning in recent years, the…

Machine Learning · Computer Science 2024-05-14 Zixin Wang , Kongyang Chen

Self-supervised learning can be used for mitigating the greedy needs of Vision Transformer networks for very large fully-annotated datasets. Different classes of self-supervised learning offer representations with either good contextual…

Computer Vision and Pattern Recognition · Computer Science 2024-07-17 Spyros Gidaris , Andrei Bursuc , Oriane Simeoni , Antonin Vobecky , Nikos Komodakis , Matthieu Cord , Patrick Pérez

The success of deep learning is usually accompanied by the growth in neural network depth. However, the traditional training method only supervises the neural network at its last layer and propagates the supervision layer-by-layer, which…

Computer Vision and Pattern Recognition · Computer Science 2022-07-13 Linfeng Zhang , Xin Chen , Junbo Zhang , Runpei Dong , Kaisheng Ma

Unsupervised representation learning has recently received lots of interest due to its powerful generalizability through effectively leveraging large-scale unlabeled data. There are two prevalent approaches for this, contrastive learning…

Machine Learning · Computer Science 2021-06-14 Saehoon Kim , Sungwoong Kim , Juho Lee