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Shape information is a strong and valuable prior in segmenting organs in medical images. However, most current deep learning based segmentation algorithms have not taken shape information into consideration, which can lead to bias towards…

Computer Vision and Pattern Recognition · Computer Science 2022-07-07 Yuan Yao , Fengze Liu , Zongwei Zhou , Yan Wang , Wei Shen , Alan Yuille , Yongyi Lu

Statistical shape models (SSMs) are a popular tool to conduct morphological analysis of anatomical structures which is a crucial step in clinical practices. However, shape representations through SSMs are based on shape coefficients and…

Image and Video Processing · Electrical Eng. & Systems 2022-03-03 Arnaud Boutillon , Asma Salhi , Valérie Burdin , Bhushan Borotikar

Statistical shape modeling (SSM) is a valuable and powerful tool to generate a detailed representation of complex anatomy that enables quantitative analysis and the comparison of shapes and their variations. SSM applies mathematics,…

Image and Video Processing · Electrical Eng. & Systems 2022-09-14 Krithika Iyer , Alan Morris , Brian Zenger , Karthik Karanth , Benjamin A Orkild , Oleksandre Korshak , Shireen Elhabian

We propose a weakly-supervised multi-view learning approach to learn category-specific surface mapping without dense annotations. We learn the underlying surface geometry of common categories, such as human faces, cars, and airplanes, given…

Computer Vision and Pattern Recognition · Computer Science 2021-05-05 Nishant Rai , Aidas Liaudanskas , Srinivas Rao , Rodrigo Ortiz Cayon , Matteo Munaro , Stefan Holzer

Statistical shape modeling is an essential tool for the quantitative analysis of anatomical populations. Point distribution models (PDMs) represent the anatomical surface via a dense set of correspondences, an intuitive and easy-to-use…

Image and Video Processing · Electrical Eng. & Systems 2022-01-11 Wenzheng Tao , Riddhish Bhalodia , Shireen Elhabian

Deformable registration has been one of the pillars of biomedical image computing. Conventional approaches refer to the definition of a similarity criterion that, once endowed with a deformation model and a smoothness constraint, determines…

Computer Vision and Pattern Recognition · Computer Science 2018-09-25 Enzo Ferrante , Puneet K. Dokania , Rafael Marini Silva , Nikos Paragios

We present G-MSM (Graph-based Multi-Shape Matching), a novel unsupervised learning approach for non-rigid shape correspondence. Rather than treating a collection of input poses as an unordered set of samples, we explicitly model the…

Computer Vision and Pattern Recognition · Computer Science 2022-12-07 Marvin Eisenberger , Aysim Toker , Laura Leal-Taixé , Daniel Cremers

Statistical Shape Modeling (SSM) is a valuable tool for investigating and quantifying anatomical variations within populations of anatomies. However, traditional correspondence-based SSM generation methods have a prohibitive inference…

Computer Vision and Pattern Recognition · Computer Science 2023-07-21 Jadie Adams , Shireen Elhabian

Particle-based shape modeling (PSM) is a popular approach to automatically quantify shape variability in populations of anatomies. The PSM family of methods employs optimization to automatically populate a dense set of corresponding…

Computer Vision and Pattern Recognition · Computer Science 2024-11-26 Hong Xu , Shireen Y. Elhabian

Establishing dense correspondences across image pairs is essential for tasks such as shape reconstruction and robot manipulation. In the challenging setting of matching across different categories, the function of an object, i.e., the…

Computer Vision and Pattern Recognition · Computer Science 2025-09-05 Stefan Stojanov , Linan Zhao , Yunzhi Zhang , Daniel L. K. Yamins , Jiajun Wu

Particle-based shape modeling (PSM) is a family of approaches that automatically quantifies shape variability across anatomical cohorts by positioning particles (pseudo landmarks) on shape surfaces in a consistent configuration. Recent…

Computer Vision and Pattern Recognition · Computer Science 2025-07-11 Hong Xu , Shireen Y. Elhabian

The pixel-wise dense prediction tasks based on weakly supervisions currently use Class Attention Maps (CAM) to generate pseudo masks as ground-truth. However, the existing methods typically depend on the painstaking training modules, which…

Computer Vision and Pattern Recognition · Computer Science 2021-11-08 Yanpeng Sun , Zechao Li

Semi-supervised medical image segmentation (SSMIS) leverages unlabeled data to reduce reliance on manually annotated images. However, current SOTA approaches predominantly focus on foreground-oriented modeling (i.e., segmenting only the…

Computer Vision and Pattern Recognition · Computer Science 2025-05-23 Luyang Cao , Jianwei Li , Yinghuan Shi

In current biological and medical research, statistical shape modeling (SSM) provides an essential framework for the characterization of anatomy/morphology. Such analysis is often driven by the identification of a relatively small number of…

Computer Vision and Pattern Recognition · Computer Science 2021-11-16 Riddhish Bhalodia , Shireen Elhabian , Ladislav Kavan , Ross Whitaker

Accurate spatial understanding is essential for image-guided surgery, augmented reality integration and context awareness. In minimally invasive procedures, where visual input is the sole intraoperative modality, establishing precise…

Computer Vision and Pattern Recognition · Computer Science 2025-12-12 Alberto Rota , Elena De Momi

In this paper, we study weakly-supervised laparoscopic image segmentation with sparse annotations. We introduce a novel Bayesian deep learning approach designed to enhance both the accuracy and interpretability of the model's segmentation,…

Computer Vision and Pattern Recognition · Computer Science 2024-10-14 Zhou Zheng , Yuichiro Hayashi , Masahiro Oda , Takayuki Kitasaka , Kensaku Mori

The performance of supervised deep learning methods for medical image segmentation is often limited by the scarcity of labeled data. As a promising research direction, semi-supervised learning addresses this dilemma by leveraging unlabeled…

Image and Video Processing · Electrical Eng. & Systems 2024-05-13 Zihang Liu , Chunhui Zhao

This work describes an unsupervised method to objectively quantify the abnormality of general anatomical shapes. The severity of an anatomical deformity often serves as a determinant in the clinical management of patients. However,…

Computer Vision and Pattern Recognition · Computer Science 2020-09-17 Wenzheng Tao , Riddhish Bhalodia , Erin Anstadt , Ladislav Kavan , Ross T. Whitaker , Jesse A. Goldstein

Semantic segmentation of blood vessels is an important task in medical image analysis, but its progress is often hindered by the scarcity of large annotated datasets and the poor generalization of models across different imaging modalities.…

Computer Vision and Pattern Recognition · Computer Science 2025-11-03 Cesar H. Comin , Wesley N. Galvão

There are many approaches to weakly-supervised training of networks to segment 2D images. By contrast, existing approaches to segmenting volumetric images rely on full-supervision of a subset of 2D slices of the 3D volume. We propose an…

Computer Vision and Pattern Recognition · Computer Science 2022-06-06 Udaranga Wickramasinghe , Patrick M. Jensen , Mian Shah , Jiancheng Yang , Pascal Fua