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The Crump-Young model consists of two fully coupled stochastic processes modeling the substrate and microorganisms dynamics in a chemostat. Substrate evolves following an ordinary differential equation whose coefficients depend of…

Probability · Mathematics 2022-05-12 Bertrand Cloez , Coralie Fritsch

In this work, we study a model of the chemostat where the species are present in two forms, isolated bacteria and under an aggregated form like attached bacteria or bacteria in flocks. We show that our general model contains a lot of models…

Dynamical Systems · Mathematics 2012-03-13 Radhoaune Fekih-Salem , Jérôme Harmand , Claude Lobry , Alain Rapaport , Tewfik Sari

Coexistence of competing species is, due to unavoidable fluctuations, always transient. In this Letter, we investigate the ultimate survival probabilities characterizing different species in cyclic competition. We show that they often obey…

Populations and Evolution · Quantitative Biology 2009-01-30 Maximilian Berr , Tobias Reichenbach , Martin Schottenloher , Erwin Frey

Explaining biodiversity in nature is a fundamental problem in ecology. An outstanding challenge is embodied in the so-called Competitive Exclusion Principle: two species competing for one limiting resource cannot coexist at constant…

Populations and Evolution · Quantitative Biology 2020-04-13 Xin Wang , Yang-Yu Liu

The current paper is concerned with the asymptotic dynamics of two species competition systems with/without chemotaxis in heterogeneous media. In the previous work \cite{ITBWS17a}, we find conditions on the parameters in such systems for…

Dynamical Systems · Mathematics 2018-08-09 Tahir Bachar Issa , Wenxian Shen

Explaining coexistence in species-rich communities of primary producers remains a challenge for ecologists because of their likely competition for shared resources. Following Hutchinson's seminal suggestion, many theoreticians have tried to…

Populations and Evolution · Quantitative Biology 2019-04-25 Coralie Picoche , Frederic Barraquand

This paper demonstrates that simple yet important characteristics of coevolution can occur in evolutionary algorithms when only a few conditions are met. We find that interaction-based fitness measurements such as fitness (linear) ranking…

Neural and Evolutionary Computing · Computer Science 2009-07-03 James M Whitacre

Similarity of competitors has been proposed to facilitate coexistence of species because it slows down competitive exclusion, thus making it easier for equalizing mechanisms to maintain diverse communities. On the other hand, chaos can…

Populations and Evolution · Quantitative Biology 2019-02-27 Pablo Rodríguez-Sánchez , Egbert H. van Nes , Marten Scheffer

We study a model of competition for resource through a chemostat-type model where species consume the common resource that is constantly supplied. We assume that the species and resources are characterized by a continuous trait. As already…

Analysis of PDEs · Mathematics 2014-02-24 Sepideh Mirrahimi , Benoît Perthame , Joe Yuichiro Wakano

All life, including cells and artificial protocells, must integrate diverse molecules into a single unit in order to reproduce. Despite expected pressure to evolve a simple system with the fastest replication speed, the mechanism by which…

Cell Behavior · Quantitative Biology 2014-08-12 Atsushi Kamimura , Kunihiko Kaneko

The biological requirements for an ecosystem to develop and maintain species diversity are in general unknown. Here we consider a model ecosystem of sessile and mutually excluding organisms competing for space [Mathiesen et al. Phys. Rev.…

Populations and Evolution · Quantitative Biology 2012-09-10 Namiko Mitarai , Joachim Mathiesen , Kim Sneppen

Our planet is roughly closed to matter, but open to energy input from the sun. However, to harness this energy, organisms must transform matter from one chemical (redox) state to another. For example, photosynthetic organisms can capture…

Populations and Evolution · Quantitative Biology 2024-03-04 Akshit Goyal , Avi I. Flamholz , Alexander P. Petroff , Arvind Murugan

A major goal of modern computational biology is to simulate the collective behaviour of large cell populations starting from the intricate web of molecular interactions occurring at the microscopic level. In this paper we describe a…

Biological Physics · Physics 2007-05-23 Roberto Chignola , Edoardo Milotti

In this paper we consider a competition system in which two diseases spread by contact. We characterize the system behavior, establishing that only some configurations are possible. In particular we discover that coexistence of the two…

Dynamical Systems · Mathematics 2014-04-06 Roberto Cavoretto , Simona Collino , Bianca Giardino , Ezio Venturino

The interplay between energy efficiency and evolutionary mechanisms is addressed. One important question is how evolutionary mechanisms can select for the optimised usage of energy in situations where it does not lead to immediate…

Populations and Evolution · Quantitative Biology 2016-11-21 André Amado , Lenin Fernández , Weini Huang , Fernando F. Ferreira , Paulo R. A. Campos

Formation and competition of associations are studied in a six-species ecological model where each species has two predators and two prey. Each site of a square lattice is occupied by an individual belonging to one of the six species. The…

Populations and Evolution · Quantitative Biology 2008-08-26 G. Szabo , A. Szolnoki , I. Borsos

Fermentation is generally modelled by kinetic equations giving the time evolutions for biomass, substrate, and product concentrations. Although these equations can be solved analytically in simple cases if substrate/product inhibition and…

Quantitative Methods · Quantitative Biology 2007-05-23 Mathieu Bouville

Competitive systems can exhibit both hierarchical (transitive) and cyclic (intransitive) structures. Despite theoretical interest in cyclic competition, which offers richer dynamics, and occupies a larger subset of the space of possible…

Populations and Evolution · Quantitative Biology 2022-05-18 Christopher Cebra , Alexander Strang

In this paper we consider a microscopic model of a simple ecosystem. The basic ingredients of this model are individuals, and both the phenotypic and genotypic levels are taken in account. The model is based on a long range cellular…

Statistical Mechanics · Physics 2007-05-23 Franco Bagnoli , Michele Bezzi

Despite the wealth of empirical and theoretical studies, the origin and maintenance of cooperation is still an evolutionary riddle. In this context, ecological life-history traits which affect the efficiency of selection may play a role,…

Populations and Evolution · Quantitative Biology 2019-04-16 Thibaut Sellinger , Johannes Müller , Volker Hösel , Aurélien Tellier