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The massive trend of integrating data-driven AI capabilities into traditional software systems is rising new intriguing challenges. One of such challenges is achieving a smooth transition from the explorative phase of Machine Learning…

Software Engineering · Computer Science 2022-05-25 Luigi Quaranta

In software engineering, numerous studies have focused on the analysis of fine-grained logs, leading to significant innovations in areas such as refactoring, security, and code completion. However, no similar studies have been conducted for…

AI-powered code assistants, such as Copilot, are quickly becoming a ubiquitous component of contemporary coding contexts. Among these environments, computational notebooks, such as Jupyter, are of particular interest as they provide rich…

Human-Computer Interaction · Computer Science 2023-01-27 Andrew M. McNutt , Chenglong Wang , Robert A. DeLine , Steven M. Drucker

It is important for researchers to understand precisely how data scientists turn raw data into insights, including typical programming patterns, workflow, and methodology. This paper contributes a novel system, called DataInquirer, that…

Human-Computer Interaction · Computer Science 2024-05-29 Jinjin Zhao , Avidgor Gal , Sanjay Krishnan

Scientific workflows facilitate computational, data manipulation, and sometimes visualization steps for scientific data analysis. They are vital for reproducing and validating experiments, usually involving computational steps in scientific…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-11-22 Jinli Duan , Shasha Dennis

Computational notebooks, such as Jupyter Notebook, have become data scientists' de facto programming environments. Many visualization researchers and practitioners have developed interactive visualization tools that support notebooks, yet…

Human-Computer Interaction · Computer Science 2024-04-01 Zijie J. Wang , David Munechika , Seongmin Lee , Duen Horng Chau

Keeping abreast of current trends, technologies, and best practices in visualization and data analysis is becoming increasingly difficult, especially for fledgling data scientists. In this paper, we propose Lodestar, an interactive…

Human-Computer Interaction · Computer Science 2022-04-19 Deepthi Raghunandan , Zhe Cui , Kartik Krishnan , Segen Tirfe , Shenzhi Shi , Tejaswi Darshan Shrestha , Leilani Battle , Niklas Elmqvist

The advent of increasingly large and complex datasets has fundamentally altered the way that scientists conduct astronomy research. The need to work closely to the data has motivated the creation of online science platforms, which include a…

Instrumentation and Methods for Astrophysics · Physics 2021-04-15 Stéphanie Juneau , Knut A. G. Olsen , Robert Nikutta , Alice Jacques , Stephen Bailey

Computational notebooks such as Jupyter are popular for exploratory data analysis and insight finding. Despite the module-based structure, notebooks visually appear as a single thread of interleaved cells containing text, code,…

Human-Computer Interaction · Computer Science 2023-08-22 Chen Chen , Jane Hoffswell , Shunan Guo , Ryan Rossi , Yeuk-Yin Chan , Fan Du , Eunyee Koh , Zhicheng Liu

In the Jupyter ecosystem, data visualization is usually done with "widgets" created as notebook cell outputs. While this mechanism works well in some circumstances, it is not well-suited to presenting interfaces that are long-lived,…

Instrumentation and Methods for Astrophysics · Physics 2022-12-09 Peter K. G. Williams , Jonathan Carifio , Henrik Norman , A. David Weigel

Nowadays, numerous industries have exceptional demand for skills in data science, such as data analysis, data mining, and machine learning. The computational notebook (e.g., Jupyter Notebook) is a well-known data science tool adopted in…

Life sciences research depends heavily on open-source academic software, yet many tools remain underused due to practical barriers. These include installation requirements that hinder adoption and limited developer resources for software…

"Computational experiments" use code and interactive visualizations to convey mathematical and physical concepts in an intuitive way, and are increasingly used to support ex cathedra lecturing in scientific and engineering disciplines.…

Computational reproducibility is fundamental to trustworthy science, yet remains difficult to achieve in practice across various research workflows, including Jupyter notebooks published alongside scholarly articles. Environment drift,…

Software Engineering · Computer Science 2026-04-02 Sheeba Samuel , Daniel Mietchen , Hemanta Lo , Martin Gaedke

In this article we describe how we successfully incorporated data analysis in Python in a first-year laboratory course without significantly altering the course structure and without overburdening students. We show how we created and used…

Physics Education · Physics 2023-09-13 Eugenio Tufino , Stefano Oss , Micol Alemani

Jupyter notebooks allow to bundle executable code with its documentation and output in one interactive environment, and they represent a popular mechanism to document and share computational workflows, including for research publications.…

Computational Engineering, Finance, and Science · Computer Science 2022-09-12 Sheeba Samuel , Daniel Mietchen

There is a gap between how people explore data and how Jupyter-like computational notebooks are designed. People explore data nonlinearly, using execution undos, branching, and/or complete reverts, whereas notebooks are designed for…

Human-Computer Interaction · Computer Science 2025-04-03 Hanxi Fang , Supawit Chockchowwat , Hari Sundaram , Yongjoo Park

Data exploration is an important aspect of the workflow of mixed-methods researchers, who conduct both qualitative and quantitative analysis. However, there currently exists few tools that adequately support both types of analysis…

Human-Computer Interaction · Computer Science 2024-05-31 Jiawen Stefanie Zhu , Zibo Zhang , Jian Zhao

Virtual Research Environments (VREs) provide user-centric support in the lifecycle of research activities, e.g., discovering and accessing research assets, or composing and executing application workflows. A typical VRE is often implemented…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-05-19 Zhiming Zhao , Spiros Koulouzis , Riccardo Bianchi , Siamak Farshidi , Zeshun Shi , Ruyue Xin , Yuandou Wang , Na Li , Yifang Shi , Joris Timmermans , W. Daniel Kissling

Jupyter Notebook is an interactive development environment commonly used for rapid experimentation of machine learning (ML) solutions. Describing the ML activities performed along code cells improves the readability and understanding of…

Software Engineering · Computer Science 2024-03-13 Miguel Perez , Selin Aydin , Horst Lichter