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Non-negative matrix factorization (NMF) is a natural model of admixture and is widely used in science and engineering. A plethora of algorithms have been developed to tackle NMF, but due to the non-convex nature of the problem, there is…

Machine Learning · Computer Science 2015-07-09 Rong Ge , James Zou

Nonnegative matrix factorization (NMF) has been widely used to learn low-dimensional representations of data. However, NMF pays the same attention to all attributes of a data point, which inevitably leads to inaccurate representation. For…

Machine Learning · Computer Science 2021-11-30 Jiao Wei , Can Tong , Bingxue Wu , Qiang He , Shouliang Qi , Yudong Yao , Yueyang Teng

Deep representations have shown promising performance when transferred to downstream tasks in a black-box manner. Yet, their inherent lack of interpretability remains a significant challenge, as these features are often opaque to human…

Machine Learning · Computer Science 2024-04-24 Yifei Wang , Qi Zhang , Yaoyu Guo , Yisen Wang

This study proposes an automated data mining framework based on autoencoders and experimentally verifies its effectiveness in feature extraction and data dimensionality reduction. Through the encoding-decoding structure, the autoencoder can…

Machine Learning · Computer Science 2024-12-04 Yaxin Liang , Xinshi Li , Xin Huang , Ziqi Zhang , Yue Yao

Symmetric Nonnegative Matrix Factorization (SNMF) models arise naturally as simple reformulations of many standard clustering algorithms including the popular spectral clustering method. Recent work has demonstrated that an elementary…

Computer Vision and Pattern Recognition · Computer Science 2016-09-20 Reza Borhani , Jeremy Watt , Aggelos Katsaggelos

Clustering on the data with multiple aspects, such as multi-view or multi-type relational data, has become popular in recent years due to their wide applicability. The approach using manifold learning with the Non-negative Matrix…

Machine Learning · Computer Science 2020-09-08 Khanh Luong , Richi Nayak

Analysis and visualization of an information network can be facilitated better using an appropriate embedding of the network. Network embedding learns a compact low-dimensional vector representation for each node of the network, and uses…

Social and Information Networks · Computer Science 2018-07-05 Sambaran Bandyopadhyay , Harsh Kara , Aswin Kannan , M N Murty

Mutational signatures are powerful summaries of the mutational processes altering the DNA of cancer cells. The usual approach to mutational signature analysis consists of decomposing the matrix of mutation counts from a sample of patients…

Methodology · Statistics 2026-02-17 Alessandro Zito , Giovanni Parmigiani , Jeffrey W. Miller

Unlike typical visual scene recognition domains, in which massive datasets are accessible to deep neural networks, medical image interpretations are often obstructed by the paucity of data. In this paper, we investigate the effectiveness of…

Computer Vision and Pattern Recognition · Computer Science 2024-04-05 Keqiang Fan , Xiaohao Cai , Mahesan Niranjan

Spectroscopic anomaly detection and isotope identification algorithms are integral components in nuclear nonproliferation applications such as search operations. The task is especially challenging in the case of mobile detector systems due…

Nonnegative Matrix Factorization (NMF) is a widely-used data analysis technique, and has yielded impressive results in many real-world tasks. Generally, existing NMF methods represent each sample with several centroids, and find the optimal…

Image and Video Processing · Electrical Eng. & Systems 2021-03-26 Mulin Chen , Xuelong Li

One of the central goals in precision health is the understanding and interpretation of high-dimensional biological data to identify genes and markers associated with disease initiation, development, and outcomes. Though significant effort…

Quantitative Methods · Quantitative Biology 2020-09-18 Zhi Huang , Paul Salama , Wei Shao , Jie Zhang , Kun Huang

Collaborative filtering generates recommendations by exploiting user-item similarities based on rating data, which often contains numerous unrated items. To predict scores for unrated items, matrix factorization techniques such as…

Statistical Mechanics · Physics 2025-07-30 Yukino Terui , Yuka Inoue , Yohei Hamakawa , Kosuke Tatsumura , Kazue Kudo

Symmetric Nonnegative Matrix Factorization (SymNMF) is a technique in data analysis and machine learning that approximates a symmetric matrix with a product of a nonnegative, low-rank matrix and its transpose. To design faster and more…

Machine Learning · Computer Science 2024-12-02 Koby Hayashi , Sinan G. Aksoy , Grey Ballard , Haesun Park

Identifying recurring patterns in high-dimensional time series data is an important problem in many scientific domains. A popular model to achieve this is convolutive nonnegative matrix factorization (CNMF), which extends classic…

Machine Learning · Computer Science 2019-07-02 Anthony Degleris , Ben Antin , Surya Ganguli , Alex H Williams

Non-negative matrix factorization (NMF) approximates a non-negative endogenous data matrix as $Y_1 \approx XB$, with non-negative latent components $X$ and coefficients $B$. Standard covariate-aware NMF is feedforward: $B$ depends only on…

Methodology · Statistics 2026-05-18 Kenichi Satoh

Bayesian Poisson Non-Negative Matrix Factorization (NMF) is widely used to model count data, including in cancer mutational signature analysis. However, standard Gibbs samplers rely on computationally expensive Poisson augmentation, and…

Methodology · Statistics 2026-03-31 Jenna M. Landy , Nishanth Basava , Giovanni Parmigiani

Binary data matrices can represent many types of data such as social networks, votes, or gene expression. In some cases, the analysis of binary matrices can be tackled with nonnegative matrix factorization (NMF), where the observed data…

Machine Learning · Statistics 2020-06-23 Alberto Lumbreras , Louis Filstroff , Cédric Févotte

Classical computing has borne witness to the development of machine learning. The integration of quantum technology into this mix will lead to unimaginable benefits and be regarded as a giant leap forward in mankind's ability to compute.…

Quantum Physics · Physics 2023-11-03 Hinako Asaoka , Kazue Kudo

Non-negative matrix factorisation (NMF) has been extensively applied to the problem of corrupted image data. Standard NMF approach minimises Euclidean distance between data matrix and factorised approximation. The traditional NMF technique…

Computer Vision and Pattern Recognition · Computer Science 2023-05-02 Pengwei Yang , Chongyangzi Teng , Jack George Mangos