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Segmenting a structural magnetic resonance imaging (MRI) scan is an important pre-processing step for analytic procedures and subsequent inferences about longitudinal tissue changes. Manual segmentation defines the current gold standard in…

Computer Vision and Pattern Recognition · Computer Science 2017-06-07 Alex Fedorov , Jeremy Johnson , Eswar Damaraju , Alexei Ozerin , Vince Calhoun , Sergey Plis

Accurate segmentation of vestibular schwannoma (VS) on Magnetic Resonance Imaging (MRI) is essential for patient management but often requires time-intensive manual annotations by experts. While recent advances in deep learning (DL) have…

Abdominal multi-organ segmentation in computed tomography (CT) is crucial for many clinical applications including disease detection and treatment planning. Deep learning methods have shown unprecedented performance in this perspective.…

Image and Video Processing · Electrical Eng. & Systems 2023-09-29 Mingjin Chen , Yongkang He , Yongyi Lu

Multi-organ segmentation holds paramount significance in many clinical tasks. In practice, compared to large fully annotated datasets, multiple small datasets are often more accessible and organs are not labelled consistently. Normally, an…

Computer Vision and Pattern Recognition · Computer Science 2025-03-31 Zhendi Gong , Susan Francis , Eleanor Cox , Stamatios N. Sotiropoulos , Dorothee P. Auer , Guoping Qiu , Andrew P. French , Xin Chen

There exists a large number of datasets for organ segmentation, which are partially annotated and sequentially constructed. A typical dataset is constructed at a certain time by curating medical images and annotating the organs of interest.…

Image and Video Processing · Electrical Eng. & Systems 2022-03-07 Pengbo Liu , Xia Wang , Mengsi Fan , Hongli Pan , Minmin Yin , Xiaohong Zhu , Dandan Du , Xiaoying Zhao , Li Xiao , Lian Ding , Xingwang Wu , S. Kevin Zhou

Existing volumetric medical image segmentation models are typically task-specific, excelling at specific target but struggling to generalize across anatomical structures or modalities. This limitation restricts their broader clinical use.…

Computer Vision and Pattern Recognition · Computer Science 2024-09-17 Haoyu Wang , Sizheng Guo , Jin Ye , Zhongying Deng , Junlong Cheng , Tianbin Li , Jianpin Chen , Yanzhou Su , Ziyan Huang , Yiqing Shen , Bin Fu , Shaoting Zhang , Junjun He , Yu Qiao

Automated noninvasive cardiac diagnosis plays a critical role in the early detection of cardiac disorders and cost-effective clinical management. Automated diagnosis involves the automated segmentation and analysis of cardiac images.…

Image and Video Processing · Electrical Eng. & Systems 2025-04-21 Racheal Mukisa , Arvind K. Bansal

Deep learning has led to state-of-the-art results for many medical imaging tasks, such as segmentation of different anatomical structures. With the increased numbers of deep learning publications and openly available code, the approach to…

Image and Video Processing · Electrical Eng. & Systems 2020-05-19 Tom van Sonsbeek , Veronika Cheplygina

According to the 2021 World Health Organization (WHO) Classification scheme for gliomas, glioma segmentation is a very important basis for diagnosis and genotype prediction. In general, 3D multimodal brain MRI is an effective diagnostic…

Image and Video Processing · Electrical Eng. & Systems 2025-06-23 Xiaoyu Shi , Shurong Chai , Yinhao Li , Jingliang Cheng , Jie Bai , Guohua Zhao , Yen-Wei Chen

Deep learning models such as convolutional neural net- work have been widely used in 3D biomedical segmentation and achieve state-of-the-art performance. However, most of them often adapt a single modality or stack multiple modalities as…

Computer Vision and Pattern Recognition · Computer Science 2017-04-26 Kuan-Lun Tseng , Yen-Liang Lin , Winston Hsu , Chung-Yang Huang

Multi-organ segmentation has extensive applications in many clinical applications. To segment multiple organs of interest, it is generally quite difficult to collect full annotations of all the organs on the same images, as some medical…

Computer Vision and Pattern Recognition · Computer Science 2020-08-18 Rui Huang , Yuanjie Zheng , Zhiqiang Hu , Shaoting Zhang , Hongsheng Li

Computer assisted technologies based on algorithmic software segmentation are an increasing topic of interest in complex surgical cases. However - due to functional instability, time consuming software processes, personnel resources or…

Automated abdominal multi-organ segmentation is a crucial yet challenging task in the computer-aided diagnosis of abdominal organ-related diseases. Although numerous deep learning models have achieved remarkable success in many medical…

Image and Video Processing · Electrical Eng. & Systems 2022-12-26 Shishuai Hu , Zehui Liao , Yong Xia

Accurate segmentation of gastrointestinal (GI) organs in magnetic resonance enterography (MRE) is critical for diagnosing inflammatory bowel disease (IBD). However, anatomical variability, class imbalance, and low tissue contrast hinder…

Image and Video Processing · Electrical Eng. & Systems 2026-04-21 Ashiqur Rahman , Md. Abu Sayed , Md Sharjis Ibne Wadud , Md. Abu Asad Al-Hafiz , Adam Mushtak , Muhammad E. H. Chowdhury

Standardized body region labelling of individual images provides data that can improve human and computer use of medical images. A CNN-based classifier was developed to identify body regions in CT and MRI. 17 CT (18 MRI) body regions…

Image and Video Processing · Electrical Eng. & Systems 2023-03-14 Philippe Raffy , Jean-François Pambrun , Ashish Kumar , David Dubois , Jay Waldron Patti , Robyn Alexandra Cairns , Ryan Young

Purpose: To present a high-performing, robust, and flexible deep learning pipeline for automatic segmentation of 30 organs-at-risk (OARs) in head and neck (H&N) cancer patients, using MRI, CT, or both. Method: We trained a segmentation…

Image and Video Processing · Electrical Eng. & Systems 2025-09-08 Sébastien Quetin , Andrew Heschl , Mauricio Murillo , Rohit Murali , Piotr Pater , George Shenouda , Shirin A. Enger , Farhad Maleki

Automatic localization and segmentation of organs-at-risk (OAR) in CT are essential pre-processing steps in medical image analysis tasks, such as radiation therapy planning. For instance, the segmentation of OAR surrounding tumors enables…

Computer Vision and Pattern Recognition · Computer Science 2022-03-02 Fernando Navarro , Guido Sasahara , Suprosanna Shit , Ivan Ezhov , Jan C. Peeken , Stephanie E. Combs , Bjoern H. Menze

The advancement of artificial intelligence (AI) for organ segmentation and tumor detection is propelled by the growing availability of computed tomography (CT) datasets with detailed, per-voxel annotations. However, these AI models often…

Image and Video Processing · Electrical Eng. & Systems 2024-05-29 Jie Liu , Yixiao Zhang , Kang Wang , Mehmet Can Yavuz , Xiaoxi Chen , Yixuan Yuan , Haoliang Li , Yang Yang , Alan Yuille , Yucheng Tang , Zongwei Zhou

We implemented and evaluated a multiple resolution residual network (MRRN) for multiple normal organs-at-risk (OAR) segmentation from computed tomography (CT) images for thoracic radiotherapy treatment (RT) planning. Our approach…

Image and Video Processing · Electrical Eng. & Systems 2020-06-02 Hyemin Um , Jue Jiang , Maria Thor , Andreas Rimner , Leo Luo , Joseph O. Deasy , Harini Veeraraghavan

Image segmentation plays an essential role in medicine for both diagnostic and interventional tasks. Segmentation approaches are either manual, semi-automated or fully-automated. Manual segmentation offers full control over the quality of…

Computer Vision and Pattern Recognition · Computer Science 2019-03-21 Tomas Sakinis , Fausto Milletari , Holger Roth , Panagiotis Korfiatis , Petro Kostandy , Kenneth Philbrick , Zeynettin Akkus , Ziyue Xu , Daguang Xu , Bradley J. Erickson
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