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Ontology embeddings map classes, roles, and individuals in ontologies into $\mathbb{R}^n$, and within $\mathbb{R}^n$ similarity between entities can be computed or new axioms inferred. For ontologies in the Description Logic…

Artificial Intelligence · Computer Science 2026-02-24 Olga Mashkova , Fernando Zhapa-Camacho , Robert Hoehndorf

OWL ontologies, whose formal semantics are rooted in Description Logic (DL), have been widely used for knowledge representation. Similar to Knowledge Graphs (KGs), ontologies are often incomplete, and maintaining and constructing them has…

Artificial Intelligence · Computer Science 2024-03-26 Mathias Jackermeier , Jiaoyan Chen , Ian Horrocks

An embedding is a function that maps entities from one algebraic structure into another while preserving certain characteristics. Embeddings are being used successfully for mapping relational data or text into vector spaces where they can…

Artificial Intelligence · Computer Science 2019-02-28 Maxat Kulmanov , Wang Liu-Wei , Yuan Yan , Robert Hoehndorf

Ontologies are widely used for representing domain knowledge and meta data, playing an increasingly important role in Information Systems, the Semantic Web, Bioinformatics and many other domains. However, logical reasoning that ontologies…

Artificial Intelligence · Computer Science 2025-04-08 Jiaoyan Chen , Olga Mashkova , Fernando Zhapa-Camacho , Robert Hoehndorf , Yuan He , Ian Horrocks

Current methods for embedding-based query answering over incomplete Knowledge Graphs (KGs) only focus on inductive reasoning, i.e., predicting answers by learning patterns from the data, and lack the complementary ability to do deductive…

Artificial Intelligence · Computer Science 2023-09-01 Medina Andresel , Trung-Kien Tran , Csaba Domokos , Pasquale Minervini , Daria Stepanova

OWL (Web Ontology Language) ontologies which are able to formally represent complex knowledge and support semantic reasoning have been widely adopted across various domains such as healthcare and bioinformatics. Recently, ontology…

Artificial Intelligence · Computer Science 2025-07-22 Hui Yang , Jiaoyan Chen , Yuan He , Yongsheng Gao , Ian Horrocks

Generating vector representations (embeddings) of OWL ontologies is a growing task due to its applications in predicting missing facts and knowledge-enhanced learning in fields such as bioinformatics. The underlying semantics of OWL…

Logic in Computer Science · Computer Science 2024-11-07 Fernando Zhapa-Camacho , Robert Hoehndorf

Knowledge Graph (KG) embeddings provide a low-dimensional representation of entities and relations of a Knowledge Graph and are used successfully for various applications such as question answering and search, reasoning, inference, and…

Artificial Intelligence · Computer Science 2021-10-22 Biswesh Mohapatra , Sumit Bhatia , Raghava Mutharaju , G. Srinivasaraghavan

OWL (Web Ontology Language) ontologies, which are able to represent both relational and type facts as standard knowledge graphs and complex domain knowledge in Description Logic (DL) axioms, are widely adopted in domains such as healthcare…

Artificial Intelligence · Computer Science 2025-02-05 Hui Yang , Jiaoyan Chen , Uli Sattler

We propose an ontology enhanced model for sentence based claim detection. We fused ontology embeddings from a knowledge base with BERT sentence embeddings to perform claim detection for the ClaimBuster and the NewsClaims datasets. Our…

Computation and Language · Computer Science 2024-02-20 Zehra Melce Hüsünbeyi , Tatjana Scheffler

Several approaches have been developed that generate embeddings for Description Logic ontologies and use these embeddings in machine learning. One approach of generating ontologies embeddings is by first embedding the ontologies into a…

Artificial Intelligence · Computer Science 2023-05-12 Fernando Zhapa-Camacho , Robert Hoehndorf

We consider the problem of finding plausible knowledge that is missing from a given ontology, as a generalisation of the well-studied taxonomy expansion task. One line of work treats this task as a Natural Language Inference (NLI) problem,…

Computation and Language · Computer Science 2024-03-27 Na Li , Thomas Bailleux , Zied Bouraoui , Steven Schockaert

Ontology, and more broadly, Knowledge Graph Matching is a challenging task in which expressiveness has not been fully addressed. Despite the increasing use of embeddings and language models for this task, approaches for generating…

Computation and Language · Computer Science 2025-02-20 Guilherme Sousa , Rinaldo Lima , Cassia Trojahn

Taking advantage of the widespread use of ontologies to organise and harmonize knowledge across several distinct domains, this paper proposes a novel approach to improve an embedding-Large Language Model (embedding-LLM) of interest by…

Computation and Language · Computer Science 2024-06-03 Francesco Ronzano , Jay Nanavati

Ontology-based approaches for predicting gene-disease associations include the more classical semantic similarity methods and more recently knowledge graph embeddings. While semantic similarity is typically restricted to hierarchical…

Machine Learning · Computer Science 2021-06-01 Susana Nunes , Rita T. Sousa , Catia Pesquita

Many ontologies, in particular in the biomedical domain, are based on the Description Logic EL++. Several efforts have been made to interpret and exploit EL++ ontologies by distributed representation learning. Specifically, concepts within…

Artificial Intelligence · Computer Science 2022-03-01 Xi Peng , Zhenwei Tang , Maxat Kulmanov , Kexin Niu , Robert Hoehndorf

It has been reliably shown that the similarity of word embeddings obtained from popular neural models such as BERT approximates effectively a form of semantic similarity of the meaning of those words. It is therefore natural to wonder if…

Artificial Intelligence · Computer Science 2024-08-02 Mathieu d'Aquin , Emmanuel Nauer

Recent years have witnessed the successful application of low-dimensional vector space representations of knowledge graphs to predict missing facts or find erroneous ones. However, it is not yet well-understood to what extent ontological…

Artificial Intelligence · Computer Science 2018-08-22 Víctor Gutiérrez-Basulto , Steven Schockaert

Ontology matching is a core task when creating interoperable and linked open datasets. In this paper, we explore a novel structure-based mapping approach which is based on knowledge graph embeddings: The ontologies to be matched are…

Artificial Intelligence · Computer Science 2022-04-11 Jan Portisch , Guilherme Costa , Karolin Stefani , Katharina Kreplin , Michael Hladik , Heiko Paulheim

Description logics (DLs) are standard knowledge representation languages for modelling ontologies, i.e. knowledge about concepts and the relations between them. Unfortunately, DL ontologies are difficult to learn from data and…

Artificial Intelligence · Computer Science 2020-06-26 Yazmín Ibáñez-García , Víctor Gutiérrez-Basulto , Steven Schockaert
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