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In histopathology, tissue samples are often larger than a standard microscope slide, making stitching of multiple fragments necessary to process entire structures such as tumors. Automated stitching is a prerequisite for scaling analysis,…

Computer Vision and Pattern Recognition · Computer Science 2025-08-06 Stefan Brandstätter , Maximilian Köller , Philipp Seeböck , Alissa Blessing , Felicitas Oberndorfer , Svitlana Pochepnia , Helmut Prosch , Georg Langs

Large pre-trained models have achieved outstanding results in sequence modeling. The Transformer block and its attention mechanism have been the main drivers of the success of these models. Recently, alternative architectures, such as…

Machine Learning · Computer Science 2025-01-29 J. Pablo Muñoz , Jinjie Yuan , Nilesh Jain

Spectral CT has shown promise for high-sensitivity quantitative imaging and material decomposition. This work presents a new device called a spatial-spectral filter (SSF) which consists of a tiled array of filter materials positioned near…

Medical Physics · Physics 2020-10-16 Matthew Tivnan , Wenying Wang , Grace Gang , J. Webster Stayman

Multimodal positron emission tomography-computed tomography (PET-CT) is used routinely in the assessment of cancer. PET-CT combines the high sensitivity for tumor detection with PET and anatomical information from CT. Tumor segmentation is…

Image and Video Processing · Electrical Eng. & Systems 2022-06-13 Xiaohang Fu , Lei Bi , Ashnil Kumar , Michael Fulham , Jinman Kim

Lung nodule detection from 3D Computed Tomography scans plays a vital role in efficient lung cancer screening. Despite the SOTA performance obtained by recent anchor-based detectors using CNNs for this task, they require predetermined…

Computer Vision and Pattern Recognition · Computer Science 2022-01-07 Xiangde Luo , Tao Song , Guotai Wang , Jieneng Chen , Yinan Chen , Kang Li , Dimitris N. Metaxas , Shaoting Zhang

Precise thigh muscle volumes are crucial to monitor the motor functionality of patients with diseases that may result in various degrees of thigh muscle loss. T1-weighted MRI is the default surrogate to obtain thigh muscle masks due to its…

Image and Video Processing · Electrical Eng. & Systems 2023-04-28 Sheng Chen , Zihao Tang , Dongnan Liu , Ché Fornusek , Michael Barnett , Chenyu Wang , Mariano Cabezas , Weidong Cai

Bundles of filaments and motors are central to contractility in cells. The classic example is striated muscle, where actomyosin contractility is mediated by highly organized sarcomeres which act as fundamental contractile units. However,…

Biological Physics · Physics 2012-06-12 Martin Lenz , Todd Thoresen , Margaret L. Gardel , Aaron R. Dinner

Recently Mamba-based methods have shown promise in abdominal organ segmentation. However, existing approaches neglect cross-channel anatomical semantic collaboration and lack explicit boundary-aware feature fusion mechanisms. To address…

Computer Vision and Pattern Recognition · Computer Science 2026-03-23 Yuyang Zheng , Mingda Zhang , Jianglong Qin , Qi Mo , Jingdan Pan , Haozhe Hu , Hongyi Huang

We address the degree to which machine learning can be used to accurately and transferably predict post-Hartree-Fock correlation energies. Refined strategies for feature design and selection are presented, and the molecular-orbital-based…

Chemical Physics · Physics 2019-04-17 Lixue Cheng , Matthew Welborn , Anders S. Christensen , Thomas F. Miller

We investigate a spatial subsystem entropy extracted from the one-particle density matrix (OPDM) in one-dimensional disordered interacting fermions that host a many-body localized (MBL) phase. Deep in the putative MBL regime, this OPDM…

Strongly Correlated Electrons · Physics 2021-07-20 Miroslav Hopjan , Fabian Heidrich-Meisner , Vincenzo Alba

Breast cancer is the most common type of cancer among women worldwide. The standard histopathology of breast tissue, the primary means of disease diagnosis, involves manual microscopic examination of stained tissue by a pathologist. Because…

Quantitative Methods · Quantitative Biology 2017-11-07 Hassaan Majeed , Tan Huu Nguyen , Mikhail Eugene Kandel , Andre Kajdacsy-Balla , Gabriel Popescu

Scanning tunneling microscopy (STM) has been a fundamental tool to characterize many-body effects in condensed matter systems, from extended solids to quantum dots. STM of molecules decoupled from the supporting conductive substrate has the…

Mesoscale and Nanoscale Physics · Physics 2011-01-14 Dimitrios Toroz , Massimo Rontani , Stefano Corni

Breast cancers is the second leading cause of cancer mortality in women; early diagnosis increase the probability of a successful therapy; any marginal improvement in this direction helps sparing lives. In this context functional imaging…

Instrumentation and Detectors · Physics 2019-05-02 Adriana Marcucci , Franco Garibaldi , Giulia Limiti , Teresa Insero , Paolo Musico , Evaristo Cisbani

We study smooth bundles over surfaces with highly connected almost parallelizable fiber $M$ of even dimension, providing necessary conditions for a manifold to be bordant to the total space of such a bundle and showing that, in most cases,…

Algebraic Topology · Mathematics 2022-02-10 Manuel Krannich , Jens Reinhold

A method has been developed for the analysis of images of sentinel lymph nodes generated by a spectral scanning device. The aim is to classify the nodes, excised during surgery for breast cancer, as normal or metastatic. The data from one…

Unlike molecular crystals, soft self-assembled fibres, micelles, vesicles, etc., exhibit a certain order in the arrangement of their constitutive monomers, but also high structural dynamicity and variability. Defects and disordered local…

Soft Condensed Matter · Physics 2021-12-16 Andrea Gardin , Claudio Perego , Giovanni Doni , Giovanni Maria Pavan

State Space Models (SSMs), especially Mamba, have shown great promise in medical image segmentation due to their ability to model long-range dependencies with linear computational complexity. However, accurate medical image segmentation…

Computer Vision and Pattern Recognition · Computer Science 2024-08-27 Chaowei Chen , Li Yu , Shiquan Min , Shunfang Wang

State-Space Models (SSMs) have attracted considerable attention in Image Restoration (IR) due to their ability to scale linearly sequence length while effectively capturing long-distance dependencies. However, deploying SSMs to edge devices…

Computer Vision and Pattern Recognition · Computer Science 2026-04-17 Yujie Chen , Haotong Qin , Zhang Zhang , Michelo Magno , Luca Benini , Yawei Li

Understanding the nature of the transition from the delocalized to the many-body localized (MBL) phase is an important unresolved issue. To probe the nature of the MBL transition, we investigate the universal properties of single-particle…

Disordered Systems and Neural Networks · Physics 2024-06-28 Atanu Jana , V. Ravi Chandra , Arti Garg

In the detection of myeloproliferative, the number of cells in each type of bone marrow cells (BMC) is an important parameter for the evaluation. In this study, we propose a new counting method, which also consists of three modules…

Computer Vision and Pattern Recognition · Computer Science 2018-05-08 Haichao Cao , Hong Liu , Enmin Song