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Based on a non-equilibrium mechanism for spatial pattern formation we study how position information can be controlled by locally coupled discrete dynamical networks, similar to gene regulation networks of cells in a developing…

Molecular Networks · Quantitative Biology 2009-08-26 Thimo Rohlf , Stefan Bornholdt

In this paper we examine boundary effects in a fractional chemotactic equation derived from a kinetic transport model describing cell movement in response to chemical gradients (chemotaxis). Specifically, we analyze reflecting boundary…

Analysis of PDEs · Mathematics 2025-06-05 Gissell Estrada-Rodriguez , Heiko Gimperlein

Population boundary is a classic indicator of climatic response in ecology. In addition to known challenges, the spatial and dynamical characteristics of the boundary are not only affected by the spatial gradient in the environmental…

Populations and Evolution · Quantitative Biology 2020-02-06 R. Juhász , I. A. Kovács

In this paper, we wish to investigate the dynamics of information transfer in evolutionary dynamics. We use information theoretic tools to track how much information an evolving population has obtained and managed to retain about different…

Populations and Evolution · Quantitative Biology 2021-04-09 Nicholas Guttenberg

Living cells deploy many resources to sense their environments, including receptors, downstream signaling molecules, time and fuel. However, it is not known which resources fundamentally limit the precision of sensing, like weak links in a…

Molecular Networks · Quantitative Biology 2014-01-31 Christopher C. Govern , Pieter Rein ten Wolde

We introduce a general framework to describe the stationary state of two driven systems exchanging particles or mass through a contact, in a slow exchange limit. The definition of chemical potentials for the systems in contact requires that…

Statistical Mechanics · Physics 2019-12-04 Jules Guioth , Eric Bertin

Motivated by applications in intelligent highway systems, the paper studies the problem of guiding mobile agents in a one-dimensional formation to their desired relative positions. Only coarse information is used which is communicated from…

Optimization and Control · Mathematics 2010-04-08 Claudio De Persis , Hui Liu , Ming Cao

Probabilities of causation are fundamental to individual-level explanation and decision making, yet they are inherently counterfactual and not point-identifiable from data in general. Existing bounds either disregard available covariates,…

Artificial Intelligence · Computer Science 2026-02-17 Yuxuan Xie , Ang Li

Excitation energy transfer in light-harvesting aggregates is highly efficient, yet whether quantum coherence plays an operational role in transport remains debated. A central challenge is that coherence is usually inferred from…

Quantum Physics · Physics 2026-03-11 Julia Liebert , Gregory D. Scholes

A stochastic nonlinear dynamical system generates information, as measured by its entropy rate. Some---the ephemeral information---is dissipated and some---the bound information---is actively stored and so affects future behavior. We derive…

Statistical Mechanics · Physics 2015-06-19 Sarah Marzen , James P. Crutchfield

This paper develops generalizations of empowerment to continuous states. Empowerment is a recently introduced information-theoretic quantity motivated by hypotheses about the efficiency of the sensorimotor loop in biological organisms, but…

Artificial Intelligence · Computer Science 2012-02-01 Tobias Jung , Daniel Polani , Peter Stone

We investigate the boundary between chemotaxis driven by spatial estimation of gradients and chemotaxis driven by temporal estimation. While it is well known that spatial chemotaxis becomes disadvantageous for small organisms at high noise…

Neural and Evolutionary Computing · Computer Science 2024-06-18 Albert Alonso , Julius B. Kirkegaard

Living systems, from single cells to higher vertebrates, receive a continuous stream of non-stationary inputs that they sense, e.g., via cell surface receptors or sensory organs. Integrating these time-varying, multi-sensory, and often…

Other Quantitative Biology · Quantitative Biology 2024-04-17 Daniel Koch , Akhilesh Nandan , Gayathri Ramesan , Aneta Koseska

Bounds are obtained on the volume fraction in a two-dimensional body containing two elastically isotropic materials with known bulk and shear moduli. These bounds use information about the average stress and strain fields, energy,…

Analysis of PDEs · Mathematics 2015-05-30 Graeme Walter Milton , Loc Hoang Nguyen

The limited distinctness of physical systems is roughly expressed by uncertainty relations. Here we show distinctness is a finite resource we can exactly count to define basic physical quantities, limits to the resolution of space and time,…

Quantum Physics · Physics 2025-07-24 Norman Margolus

When monitoring the dynamics of stochastic systems, such as interacting particles agitated by thermal noise, disentangling deterministic forces from Brownian motion is challenging. Indeed, we show that there is an information-theoretic…

Soft Condensed Matter · Physics 2020-04-16 Anna Frishman , Pierre Ronceray

Living cells often need to extract information from biochemical signals that are noisy. We study how accurately cells can measure chemical concentrations with signaling networks that are linear. For stationary signals of long duration, they…

Molecular Networks · Quantitative Biology 2015-06-11 Christopher C. Govern , Pieter Rein ten Wolde

This paper studies the existence of solutions and, in particular, the well-posedness of a class of boundary control systems. Our main result provides explicit and verifiable conditions on the system data that guarantee continuous dependence…

Optimization and Control · Mathematics 2026-03-13 Yassine El Gantouh , Jun Zheng , Guchuan Zhu

Physical reasoning is a core aspect of intelligence in animals and humans. A central question is what model should be used as a basis for reasoning. Existing work considered models ranging from intuitive physics and physical simulators to…

Robotics · Computer Science 2020-07-07 Marc Toussaint , Jung-Su Ha , Danny Driess

In this paper, we establish generalization bounds for transductive learning algorithms in the context of information theory and PAC-Bayes, covering both the random sampling and the random splitting setting. First, we show that the…

Machine Learning · Computer Science 2025-01-22 Huayi Tang , Yong Liu
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