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We introduce an explainability method for biomedical hypothesis generation systems, built on top of the novel Hypothesis Generation Context Retriever framework. Our approach combines semantic graph-based retrieval and relevant…

Information Retrieval · Computer Science 2025-11-11 Ilya Tyagin , Saeideh Valipour , Aliaksandra Sikirzhytskaya , Michael Shtutman , Ilya Safro

Large Language Models (LLMs) showcase remarkable abilities, yet they struggle with limitations such as hallucinations, outdated knowledge, opacity, and inexplicable reasoning. To address these challenges, Retrieval-Augmented Generation…

Computation and Language · Computer Science 2024-10-03 Sourav Verma

Despite recent progress, it has been difficult to prevent semantic hallucinations in generative Large Language Models. One common solution to this is augmenting LLMs with a retrieval system and making sure that the generated output is…

Computation and Language · Computer Science 2023-02-16 Renat Aksitov , Chung-Ching Chang , David Reitter , Siamak Shakeri , Yunhsuan Sung

Ensuring the verifiability of model answers is a fundamental challenge for retrieval-augmented generation (RAG) in the question answering (QA) domain. Recently, self-citation prompting was proposed to make large language models (LLMs)…

Computation and Language · Computer Science 2024-12-02 Jirui Qi , Gabriele Sarti , Raquel Fernández , Arianna Bisazza

Large Language Models (LLMs) have emerged as powerful assistants for scientific writing. However, concerns remain about the quality and reliability of the generated text, including citation accuracy and faithfulness. While most recent work…

Digital Libraries · Computer Science 2026-04-14 Yee Man Choi , Xuehang Guo , Yi R. Fung , Qingyun Wang

Large language models are often assumed to acquire increasingly structured, generalizable internal representations simply by scaling data and parameters. We interrogate this assumption by introducing a Clinical Trial Natural Language…

Artificial Intelligence · Computer Science 2025-08-15 Maël Jullien , Marco Valentino , André Freitas

Scientific literature is growing exponentially, creating a critical bottleneck for researchers to efficiently synthesize knowledge. While general-purpose Large Language Models (LLMs) show potential in text processing, they often fail to…

Computation and Language · Computer Science 2025-09-11 Fengyu She , Nan Wang , Hongfei Wu , Ziyi Wan , Jingmian Wang , Chang Wang

Large language models (LLMs) often generate content with unsupported or unverifiable content, known as "hallucinations." To address this, retrieval-augmented LLMs are employed to include citations in their content, grounding the content in…

Information Retrieval · Computer Science 2024-08-23 Weijia Zhang , Mohammad Aliannejadi , Jiahuan Pei , Yifei Yuan , Jia-Hong Huang , Evangelos Kanoulas

Large language models (LLMs) exhibit remarkable generative capabilities but often suffer from hallucinations. Retrieval-augmented generation (RAG) offers an effective solution by incorporating external knowledge, but existing methods still…

Computation and Language · Computer Science 2024-12-17 Xiaoxi Li , Jiajie Jin , Yujia Zhou , Yongkang Wu , Zhonghua Li , Qi Ye , Zhicheng Dou

While Retrieval-Augmented Generation (RAG) enables large language models (LLMs) to generate contextually grounded responses, contextual faithfulness remains challenging as LLMs may not consistently trust provided context, leading to…

Computation and Language · Computer Science 2026-02-10 Yongchao Long , Xian Wu , Yingying Zhang , Xianbin Wen , Yuxi Zhou , Shenda Hong

Large language models (LLMs) have grown in their usage to provide support for question answering across numerous disciplines. The models on their own have already shown promise for answering basic questions, however fail quickly where…

Information Retrieval · Computer Science 2025-04-15 David Brett , Anniek Myatt

Investigative journalists routinely confront large document collections. Large language models (LLMs) with retrieval-augmented generation (RAG) capabilities promise to accelerate the process of document discovery, but newsroom adoption…

Information Retrieval · Computer Science 2025-10-01 Nick Hagar , Nicholas Diakopoulos , Jeremy Gilbert

Systematic reviews are crucial for synthesizing scientific evidence but remain labor-intensive, especially when extracting detailed methodological information. Large language models (LLMs) offer potential for automating methodological…

Computation and Language · Computer Science 2025-10-14 Wenqing Zhang , Trang Nguyen , Elizabeth A. Stuart , Yiqun T. Chen

Citations in scholarly work serve the essential purpose of acknowledging and crediting the original sources of knowledge that have been incorporated or referenced. Depending on their surrounding textual context, these citations are used for…

Digital Libraries · Computer Science 2023-09-19 Yang Zhang , Yufei Wang , Kai Wang , Quan Z. Sheng , Lina Yao , Adnan Mahmood , Wei Emma Zhang , Rongying Zhao

In recent years, the input context sizes of large language models (LLMs) have increased dramatically. However, existing evaluation methods have not kept pace, failing to comprehensively assess the efficiency of models in handling long…

Computation and Language · Computer Science 2024-11-07 Yuri Kuratov , Aydar Bulatov , Petr Anokhin , Ivan Rodkin , Dmitry Sorokin , Artyom Sorokin , Mikhail Burtsev

Large language models (LLMs) have significantly advanced natural language processing tasks, yet they are susceptible to generating inaccurate or unreliable responses, a phenomenon known as hallucination. In critical domains such as health…

Computation and Language · Computer Science 2024-09-20 Sumera Anjum , Hanzhi Zhang , Wenjun Zhou , Eun Jin Paek , Xiaopeng Zhao , Yunhe Feng

Recent advancements in long-context language models (LCLMs) promise to transform Retrieval-Augmented Generation (RAG) by simplifying pipelines. With their expanded context windows, LCLMs can process entire knowledge bases and perform…

Computation and Language · Computer Science 2025-06-10 Yifu Qiu , Varun Embar , Yizhe Zhang , Navdeep Jaitly , Shay B. Cohen , Benjamin Han

Hallucinations in large language model (LLM) outputs severely limit their reliability in knowledge-intensive tasks such as question answering. To address this challenge, we introduce REFIND (Retrieval-augmented Factuality hallucINation…

Computation and Language · Computer Science 2025-04-09 DongGeon Lee , Hwanjo Yu

Large Language Models have taken the cognitive science world by storm. It is perhaps timely now to take stock of the various research paradigms that have been used to make scientific inferences about ``cognition" in these models or about…

Artificial Intelligence · Computer Science 2024-06-17 Desmond C. Ong

Large language models (LLMs) have shown substantial capacity for generating fluent, contextually appropriate responses. However, they can produce hallucinated outputs, especially when a user query includes one or more false premises-claims…

Computation and Language · Computer Science 2026-02-18 Yuehan Qin , Shawn Li , Yi Nian , Xinyan Velocity Yu , Yue Zhao , Xuezhe Ma
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