English
Related papers

Related papers: Optimized Drug Design using Multi-Objective Evolut…

200 papers

Multi-objective symbolic regression has the advantage that while the accuracy of the learned models is maximized, the complexity is automatically adapted and need not be specified a-priori. The result of the optimization is not a single…

Machine Learning · Computer Science 2021-09-02 Michael Kommenda , Andreas Beham , Michael Affenzeller , Gabriel Kronberger

This paper introduces a non-parametric estimation algorithm designed to effectively estimate the joint distribution of model parameters with application to population pharmacokinetics. Our research group has previously developed the…

To enable emerging applications such as deep machine learning and graph processing, 3D network-on-chip (NoC) enabled heterogeneous manycore platforms that can integrate many processing elements (PEs) are needed. However, designing such…

Machine Learning · Computer Science 2023-03-14 Sirui Qi , Yingheng Li , Sudeep Pasricha , Ryan Gary Kim

Designing reward functions that guide generative molecular design (GMD) algorithms to desirable areas of chemical space is of critical importance in AI-driven drug discovery. Traditionally, this has been a manual and error-prone task; the…

Machine Learning · Computer Science 2023-12-18 Marius Urbonas , Temitope Ajileye , Paul Gainer , Douglas Pires

The performance of multiobjective algorithms varies across problems, making it hard to develop new algorithms or apply existing ones to new problems. To simplify the development and application of new multiobjective algorithms, there has…

Neural and Evolutionary Computing · Computer Science 2022-07-08 Yuri Lavinas , Marcelo Ladeira , Gabriela Ochoa , Claus Aranha

Non-dominated Sorting Genetic Algorithm (NSGA) has established itself as a benchmark algorithm for Multiobjective Optimization. The determination of pareto-optimal solutions is the key to its success. However the basic algorithm suffers…

Data Structures and Algorithms · Computer Science 2010-03-25 Rio G. L. D'Souza , K. Chandra Sekaran , A. Kandasamy

Software systems continuously evolve due to new functionalities, requirements, or maintenance activities. In the context of software evolution, software refactoring has gained a strategic relevance. The space of possible software…

Software Engineering · Computer Science 2024-01-31 Vittorio Cortellessa , Daniele Di Pompeo , Michele Tucci

Semantic diversity in Genetic Programming has proved to be highly beneficial in evolutionary search. We have witnessed a surge in the number of scientific works in the area, starting first in discrete spaces and moving then to continuous…

Neural and Evolutionary Computing · Computer Science 2021-04-15 Fergal Stapleton , Edgar Galván

Generative molecular optimization aims to design molecules with properties surpassing those of existing compounds. However, such candidates are rare and expensive to evaluate, yielding sample efficiency essential. Additionally, surrogate…

With the ever increasing complexity of specifications, manual sizing for analog circuits recently became very challenging. Especially for innovative, large-scale circuits designs, with tens of design variables, operating conditions and…

Machine Learning · Computer Science 2022-06-07 Catalin Visan , Octavian Pascu , Marius Stanescu , Elena-Diana Sandru , Cristian Diaconu , Andi Buzo , Georg Pelz , Horia Cucu

In therapeutic design, balancing various physiochemical properties is crucial for molecule development, similar to how Multiparameter Optimization (MPO) evaluates multiple variables to meet a primary goal. While many molecular features can…

Biomolecules · Quantitative Biology 2024-01-03 Agustin Kruel , Andrew D. McNaughton , Neeraj Kumar

Parameter control has succeeded in accelerating the convergence process of evolutionary algorithms. While empirical and theoretical studies have shed light on the behavior of algorithms for single-objective optimization, little is known…

Neural and Evolutionary Computing · Computer Science 2023-05-09 Furong Ye , Frank Neumann , Jacob de Nobel , Aneta Neumann , Thomas Bäck

The Non-dominated Sorting Genetic Algorithm II (NSGA-II) is the most prominent multi-objective evolutionary algorithm for real-world applications. While it performs evidently well on bi-objective optimization problems, empirical studies…

Neural and Evolutionary Computing · Computer Science 2023-08-25 Simon Wietheger , Benjamin Doerr

This study tasckles the problem of many-objective sequence optimization for semi-automated robotic disassembly operations. To this end, we employ a many-objective genetic algorithm (MaOGA) algorithm inspired by the Non-dominated Sorting…

Robotics · Computer Science 2024-01-04 Takuya Kiyokawa , Kensuke Harada , Weiwei Wan , Tomoki Ishikura , Naoya Miyaji , Genichiro Matsuda

The present work provides a new approach to evolve ligand structures which represent possible drug to be docked to the active site of the target protein. The structure is represented as a tree where each non-empty node represents a…

Neural and Evolutionary Computing · Computer Science 2012-05-30 Arnab Ghosh , Avishek Ghosh , Arkabandhu Chowdhury , Amit Konar

Bayesian optimization is an advanced tool to perform ecient global optimization It consists on enriching iteratively surrogate Kriging models of the objective and the constraints both supposed to be computationally expensive of the targeted…

Machine Learning · Computer Science 2025-04-14 Robin Grapin , Youssef Diouane , Joseph Morlier , Nathalie Bartoli , Thierry Lefebvre , Paul Saves , Jasper Bussemaker

Creating diverse sets of high quality solutions has become an important problem in recent years. Previous works on diverse solutions problems consider solutions' objective quality and diversity where one is regarded as the optimization goal…

Neural and Evolutionary Computing · Computer Science 2024-01-17 Anh Viet Do , Mingyu Guo , Aneta Neumann , Frank Neumann

Combination therapies are often needed for effective clinical outcomes in the management of complex diseases, but presently they are generally based on empirical clinical experience. Here we suggest a novel application of search algorithms,…

Many real-world optimization problems such as engineering design can be eventually modeled as the corresponding multiobjective optimization problems (MOPs) which must be solved to obtain approximate Pareto optimal fronts. Multiobjective…

Neural and Evolutionary Computing · Computer Science 2021-11-12 Wang Chen , Jian Chen , Weitian Wu , Xinmin Yang , Hui Li

To solve real-world expensive constrained multi-objective optimization problems (ECMOPs), surrogate/approximation models are commonly incorporated in evolutionary algorithms to pre-select promising candidate solutions for evaluation.…

Neural and Evolutionary Computing · Computer Science 2024-05-24 Kamrul Hasan Rahi