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The problem Parsimony Haplotyping (PH) asks for the smallest set of haplotypes which can explain a given set of genotypes, and the problem Minimum Perfect Phylogeny Haplotyping (MPPH) asks for the smallest such set which also allows the…

Other Quantitative Biology · Quantitative Biology 2007-05-23 Leo van Iersel , Judith Keijsper , Steven Kelk , Leen Stougie

Hash tables are essential building blocks in data-intensive applications, yet existing GPU implementations often struggle with concurrent updates, high load factors, and irregular memory access patterns. We present Hive hash table, a…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-10-20 Md Sabbir Hossain Polak , David Troendle , Byunghyun Jang

Fully Homomorphic Encryption over the Torus (TFHE) allows arbitrary computations to happen directly on ciphertexts using homomorphic logic gates. However, each TFHE gate on state-of-the-art hardware platforms such as GPUs and FPGAs is…

Cryptography and Security · Computer Science 2022-02-18 Lei Jiang , Qian Lou , Nrushad Joshi

cryptographic hash function is a deterministic procedure that compresses an arbitrary block of numerical data and returns a fixed-size bit string. There exist many hash functions: MD5, HAVAL, SHA, ... It was reported that these hash…

Cryptography and Security · Computer Science 2011-11-23 Rene Ndoundam , Juvet Karnel Sadie

Given an increasing sequence of integers $x_1,\ldots,x_n$ from a universe $\{0,\ldots,u-1\}$, the monotone minimal perfect hash function (MMPHF) for this sequence is a data structure that answers the following rank queries: $rank(x) = i$ if…

Data Structures and Algorithms · Computer Science 2024-04-19 Dmitry Kosolobov

With growing deployment of Internet of Things (IoT) and machine learning (ML) applications, which need to leverage computation on edge and cloud resources, it is important to develop algorithms and tools to place these distributed…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-12-30 Xiangchen Zhao , Diyi Hu , Bhaskar Krishnamachari

Fully homomorphic encryption allows the evaluation of arbitrary functions on encrypted data. It can be leveraged to secure outsourced and multiparty computation. TFHE is a fast torus-based fully homomorphic encryption scheme that allows…

Cryptography and Security · Computer Science 2025-12-29 Valentin Reyes Häusler , Gabriel Ott , Aruna Jayasena , Andreas Peter

Network algorithms always prefer low memory cost and fast packet processing speed. Forwarding information base (FIB), as a typical network processing component, requires a scalable and memory-efficient algorithm to support fast lookups. In…

Networking and Internet Architecture · Computer Science 2017-11-23 Ye Yu , Djamal Belazzougui , Chen Qian , Qin Zhang

Breadth-first search (BFS) is a fundamental graph algorithm that presents significant challenges for parallel implementation due to irregular memory access patterns, load imbalance and synchronization overhead. In this paper, we introduce a…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-03-04 Marati Bhaskar , Raghavendra Kanakagiri

In this paper we present a lock-free version of Hopscotch Hashing. Hopscotch Hashing is an open addressing algorithm originally proposed by Herlihy, Shavit, and Tzafrir, which is known for fast performance and excellent cache locality. The…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-11-11 Robert Kelly , Barak A. Pearlmutter , Phil Maguire

The Suffix Array is a classic text index enabling on-line pattern matching queries via simple binary search. The main drawback of the Suffix Array is that it takes linear space in the text's length, even if the text itself is extremely…

Data Structures and Algorithms · Computer Science 2025-03-19 Davide Cenzato , Lore Depuydt , Travis Gagie , Sung-Hwan Kim , Giovanni Manzini , Francisco Olivares , Nicola Prezza

HighwayHash is a new pseudo-random function based on SIMD multiply and permute instructions for thorough and fast hashing. It is 5.2 times as fast as SipHash for 1 KiB inputs. An open-source implementation is available under a permissive…

Cryptography and Security · Computer Science 2017-02-07 Jyrki Alakuijala , Bill Cox , Jan Wassenberg

A recent work shows how we can optimize a tree based mode of operation for a hash function where the sizes of input message blocks and digest are the same, subject to the constraint that the involved tree structure has all its leaves at the…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-06-28 Kevin Atighehchi

Introduction. Distributed data processing and storage systems require efficient methods to distribute keys across buckets. While simple and fast, the traditional modulo-based mapping is unstable when the number of buckets changes, leading…

Data Structures and Algorithms · Computer Science 2025-11-11 Otmar Ertl

This paper proposes a design of hierarchical fuzzy inference tree (HFIT). An HFIT produces an optimum treelike structure, i.e., a natural hierarchical structure that accommodates simplicity by combining several low-dimensional fuzzy…

Artificial Intelligence · Computer Science 2017-05-17 Varun Kumar Ojha , Vaclav Snasel , Ajith Abraham

Weighted minwise hashing (WMH) is one of the fundamental subroutine, required by many celebrated approximation algorithms, commonly adopted in industrial practice for large scale-search and learning. The resource bottleneck of the…

Data Structures and Algorithms · Computer Science 2016-02-29 Anshumali Shrivastava

With meteoric developments in communication systems and data storage technologies, the need for secure data transmission is more crucial than ever. The level of security provided by any cryptosystem relies on the sensitivity of the private…

Cryptography and Security · Computer Science 2020-11-03 Unnikrishnan Menon , Anirudh Rajiv Menon , Atharva Hudlikar

Fully Homomorphic Encryption (FHE) promises the ability to compute over encrypted data without revealing sensitive contents. However, enabling high-frequency updates and statistical analysis in outsourced databases remains elusive due to…

Cryptography and Security · Computer Science 2026-04-28 Dongfang Zhao

Bit arrays, or bitmaps, are used to significantly speed up set operations in several areas, such as data warehousing, information retrieval, and data mining, to cite a few. However, bitmaps usually use a large storage space, thus requiring…

Data Structures and Algorithms · Computer Science 2015-03-14 Alessandro Colantonio , Roberto Di Pietro

The need for privacy-preserving analytics is higher than ever due to the severity of privacy risks and to comply with new privacy regulations leading to an amplified interest in privacy-preserving techniques that try to balance between…

Cryptography and Security · Computer Science 2021-01-05 Ahmad Al Badawi , Luong Hoang , Chan Fook Mun , Kim Laine , Khin Mi Mi Aung