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Identifying relationships between molecular variations and their clinical presentations has been challenged by the heterogeneous causes of a disease. It is imperative to unveil the relationship between the high dimensional molecular…

Methodology · Statistics 2021-09-02 Wennan Chang , Changlin Wan , Yong Zang , Chi Zhang , Sha Cao

Convex clustering has recently garnered increasing interest due to its attractive theoretical and computational properties, but its merits become limited in the face of high-dimensional data. In such settings, pairwise affinity terms that…

Methodology · Statistics 2021-04-02 Saptarshi Chakraborty , Jason Xu

The use of brain images as markers for diseases or behavioral differences is challenged by the small effects size and the ensuing lack of power, an issue that has incited researchers to rely more systematically on large cohorts. Coupled…

Machine Learning · Statistics 2015-11-17 Bertrand Thirion , Andrés Hoyos-Idrobo , Jonas Kahn , Gael Varoquaux

Dimension reduction is widely regarded as an effective way for decreasing the computation, storage and communication loads of data-driven intelligent systems, leading to a growing demand for statistical methods that allow analysis (e.g.,…

Computer Vision and Pattern Recognition · Computer Science 2019-08-23 Guangcan Liu , Zhao Zhang , Qingshan Liu , Kongkai Xiong

We present an unsupervised data processing workflow that is specifically designed to obtain a fast conformational clustering of long molecular dynamics simulation trajectories. In this approach we combine two dimensionality reduction…

Chemical Physics · Physics 2023-08-09 Simon Hunkler , Kay Diederichs , Oleksandra Kukharenko , Christine Peter

This paper introduces {\em fusion subspace clustering}, a novel method to learn low-dimensional structures that approximate large scale yet highly incomplete data. The main idea is to assign each datum to a subspace of its own, and minimize…

Machine Learning · Computer Science 2022-05-24 Usman Mahmood , Daniel Pimentel-Alarcón

Co-clustering targets on grouping the samples (e.g., documents, users) and the features (e.g., words, ratings) simultaneously. It employs the dual relation and the bilateral information between the samples and features. In many realworld…

Machine Learning · Computer Science 2016-11-18 Ping Li , Jiajun Bu , Chun Chen , Zhanying He , Deng Cai

We describe the applications of clustering and visualization tools using the so-called neutral B anomalies as an example. Clustering permits parameter space partitioning into regions that can be separated with some given measurements. It…

Data Analysis, Statistics and Probability · Physics 2023-04-04 Ursula Laa , German Valencia

Clustering is a crucial tool for analyzing data in virtually every scientific and engineering discipline. There are more scalable solutions framed to enable time and space clustering for the future large-scale data analyses. As a result,…

Databases · Computer Science 2023-08-23 D. D. D. Suribabu , T. Hitendra Sarma , B. Eswar Reddy

Nonlinear dimensionality reduction or, equivalently, the approximation of high-dimensional data using a low-dimensional nonlinear manifold is an active area of research. In this paper, we will present a thematically different approach to…

Machine Learning · Computer Science 2019-12-21 Kelum Gajamannage , Randy Paffenroth

Dimensionality reduction is a topic of recent interest. In this paper, we present the classification constrained dimensionality reduction (CCDR) algorithm to account for label information. The algorithm can account for multiple classes as…

Machine Learning · Statistics 2009-09-29 Raviv Raich , Jose A. Costa , Steven B. Damelin , Alfred O. Hero

Clustering methods with dimension reduction have been receiving considerable wide interest in statistics lately and a lot of methods to simultaneously perform clustering and dimension reduction have been proposed. This work presents a novel…

Methodology · Statistics 2014-06-17 Michio Yamamoto , Kenichi Hayashi

Deep clustering has increasingly been demonstrating superiority over conventional shallow clustering algorithms. Deep clustering algorithms usually combine representation learning with deep neural networks to achieve this performance,…

Machine Learning · Computer Science 2020-07-01 Ryan McConville , Raul Santos-Rodriguez , Robert J Piechocki , Ian Craddock

Breast cancer is a significant global health issue, and the diagnosis of breast imaging has always been challenging. Mammography images typically have extremely high resolution, with lesions occupying only a very small area. Down-sampling…

Computer Vision and Pattern Recognition · Computer Science 2025-03-18 Shilong Yang , Chulong Zhang , Qi Zang , Juan Yu , Liang Zeng , Xiao Luo , Yexuan Xing , Xin Pan , Qi Li , Xiaokun Liang , Yaoqin Xie

Non-linear dimensionality reduction can be performed by \textit{manifold learning} approaches, such as Stochastic Neighbour Embedding (SNE), Locally Linear Embedding (LLE) and Isometric Feature Mapping (ISOMAP). These methods aim to produce…

Machine Learning · Statistics 2021-12-09 Theodoulos Rodosthenous , Vahid Shahrezaei , Marina Evangelou

Kernel approximation via nonlinear random feature maps is widely used in speeding up kernel machines. There are two main challenges for the conventional kernel approximation methods. First, before performing kernel approximation, a good…

Machine Learning · Statistics 2015-03-16 Felix X. Yu , Sanjiv Kumar , Henry Rowley , Shih-Fu Chang

This paper addresses the problem of very large-scale image retrieval, focusing on improving its accuracy and robustness. We target enhanced robustness of search to factors such as variations in illumination, object appearance and scale,…

Computer Vision and Pattern Recognition · Computer Science 2019-06-18 Syed Sameed Husain , Miroslaw Bober

Clustering algorithms remain valuable tools for grouping and summarizing the most important aspects of data. Example areas where this is the case include image segmentation, dimension reduction, signals analysis, model order reduction,…

Numerical Analysis · Mathematics 2024-12-24 Guy B. Oldaker , Maria Emelianenko

Multidimensional scaling is a statistical process that aims to embed high dimensional data into a lower-dimensional space; this process is often used for the purpose of data visualisation. Common multidimensional scaling algorithms tend to…

Machine Learning · Computer Science 2022-02-25 Pierre Lambert , Cyril de Bodt , Michel Verleysen , John Lee

A hierarchical scheme for clustering data is presented which applies to spaces with a high number of dimension ($N_{_{D}}>3$). The data set is first reduced to a smaller set of partitions (multi-dimensional bins). Multiple clustering…

Data Analysis, Statistics and Probability · Physics 2017-10-16 Kevin McIlhany , Stephen Wiggins