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Biomedical named entity recognition (NER) is a fundamental task in text mining of medical documents and has many applications. Deep learning based approaches to this task have been gaining increasing attention in recent years as their…

Computation and Language · Computer Science 2018-08-16 Devendra Singh Sachan , Pengtao Xie , Mrinmaya Sachan , Eric P Xing

Named entity recognition (NER) is evolving from a sequence labeling task into a generative paradigm with the rise of large language models (LLMs). We conduct a systematic evaluation of open-source LLMs on both flat and nested NER tasks. We…

Computation and Language · Computer Science 2026-01-27 Qi Zhan , Yile Wang , Hui Huang

Biomedical Named Entity Recognition (NER) is a fundamental task of Biomedical Natural Language Processing for extracting relevant information from biomedical texts, such as clinical records, scientific publications, and electronic health…

Computation and Language · Computer Science 2023-12-27 Fahime Shahrokh , Nasser Ghadiri , Rasoul Samani , Milad Moradi

Training a neural network-based biomedical named entity recognition (BioNER) model usually requires extensive and costly human annotations. While several studies have employed multi-task learning with multiple BioNER datasets to reduce…

Computation and Language · Computer Science 2024-12-31 Yu Yin , Hyunjae Kim , Xiao Xiao , Chih Hsuan Wei , Jaewoo Kang , Zhiyong Lu , Hua Xu , Meng Fang , Qingyu Chen

Recent multilingual named entity recognition (NER) work has shown that large language models (LLMs) can provide effective synthetic supervision, yet such datasets have mostly appeared as by-products of broader experiments rather than as…

Computation and Language · Computer Science 2025-12-17 Jonas Golde , Patrick Haller , Alan Akbik

Large Language Models (LLMs) demonstrate remarkable versatility in various NLP tasks but encounter distinct challenges in biomedical due to the complexities of language and data scarcity. This paper investigates LLMs application in the…

Computation and Language · Computer Science 2024-07-12 Masoud Monajatipoor , Jiaxin Yang , Joel Stremmel , Melika Emami , Fazlolah Mohaghegh , Mozhdeh Rouhsedaghat , Kai-Wei Chang

Biomedical Named Entity Recognition (BioNER) is a crucial step for analyzing Biomedical texts, which aims at extracting biomedical named entities from a given text. Different supervised machine learning algorithms have been applied for…

Computation and Language · Computer Science 2019-08-19 Hamada A. Nayel , H. L. Shashirekha , Hiroyuki Shindo , Yuji Matsumoto

Named entity recognition (NER) is a foundational technology for information extraction. This paper presents a flexible NER framework compatible with different languages and domains. Inspired by the idea of distant supervision (DS), this…

Computation and Language · Computer Science 2019-08-15 Hongyin Zhu , Wenpeng Hu , Yi Zeng

Large language models (LLMs) allow us to generate high-quality human-like text. One interesting task in natural language processing (NLP) is named entity recognition (NER), which seeks to detect mentions of relevant information in…

Computation and Language · Computer Science 2024-06-10 Fabián Villena , Luis Miranda , Claudio Aracena

This paper investigates the problem of Named Entity Recognition (NER) for extreme low-resource languages with only a few hundred tagged data samples. NER is a fundamental task in Natural Language Processing (NLP). A critical driver…

Computation and Language · Computer Science 2022-12-20 Shashank Sonkar , Zichao Wang , Richard G. Baraniuk

The use of LLMs for natural language processing has become a popular trend in the past two years, driven by their formidable capacity for context comprehension and learning, which has inspired a wave of research from academics and industry…

Computation and Language · Computer Science 2024-04-09 Faren Yan , Peng Yu , Xin Chen

Recent studies have explored various approaches for treating candidate named entity spans as both source and target sequences in named entity recognition (NER) by leveraging large language models (LLMs). Although previous approaches have…

Computation and Language · Computer Science 2026-03-27 Sungwoo Han , Hyeyeon Kim , Jingun Kwon , Hidetaka Kamigaito , Manabu Okumura

As opposed to general English, many concepts in biomedical terminology have been designed in recent history by biomedical professionals with the goal of being precise and concise. This is often achieved by concatenating meaningful…

Computation and Language · Computer Science 2023-07-11 Bernal Jiménez Gutiérrez , Huan Sun , Yu Su

Named Entity Recognition (NER) is a fundamental problem in natural language processing (NLP). However, the task of extracting longer entity spans (e.g., awards) from extended texts (e.g., homepages) is barely explored. Current NER methods…

Computation and Language · Computer Science 2025-02-12 Yelin Chen , Fanjin Zhang , Jie Tang

Training a Named Entity Recognition (NER) model often involves fixing a taxonomy of entity types. However, requirements evolve and we might need the NER model to recognize additional entity types. A simple approach is to re-annotate entire…

Lately, instruction-based techniques have made significant strides in improving performance in few-shot learning scenarios. They achieve this by bridging the gap between pre-trained language models and fine-tuning for specific downstream…

Information Retrieval · Computer Science 2024-01-25 Hiranmai Sri Adibhatla , Pavan Baswani , Manish Shrivastava

Web-scale visual entity recognition, the task of associating images with their corresponding entities within vast knowledge bases like Wikipedia, presents significant challenges due to the lack of clean, large-scale training data. In this…

Computer Vision and Pattern Recognition · Computer Science 2024-11-01 Mathilde Caron , Alireza Fathi , Cordelia Schmid , Ahmet Iscen

Speech emotion recognition (SER) models typically rely on costly human-labeled data for training, making scaling methods to large speech datasets and nuanced emotion taxonomies difficult. We present LanSER, a method that enables the use of…

Computation and Language · Computer Science 2023-09-11 Taesik Gong , Josh Belanich , Krishna Somandepalli , Arsha Nagrani , Brian Eoff , Brendan Jou

When performing named entity recognition (NER), entity length is variable and dependent on a specific domain or dataset. Pre-trained language models (PLMs) are used to solve NER tasks and tend to be biased toward dataset patterns such as…

Computation and Language · Computer Science 2022-01-12 Minbyul Jeong , Jaewoo Kang

In recent years, with the growing amount of biomedical documents, coupled with advancement in natural language processing algorithms, the research on biomedical named entity recognition (BioNER) has increased exponentially. However, BioNER…

Computation and Language · Computer Science 2020-09-22 Usman Naseem , Matloob Khushi , Vinay Reddy , Sakthivel Rajendran , Imran Razzak , Jinman Kim