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Networks are widely used to represent interaction pattern among the components in complex systems. Structures of real networks from differ- ent domains may vary quite significantly. Since there is an interplay be- tween network architecture…

Quantitative Methods · Quantitative Biology 2016-05-10 Krishanu Deyasi , Shashankaditya Upadhyay , Anirban Banerjee

Spiking neural networks (SNNs) have superb characteristics in sensory information recognition tasks due to their biological plausibility. However, the performance of some current spiking-based models is limited by their structures which…

Neural and Evolutionary Computing · Computer Science 2023-04-20 Qi Xu , Yaxin Li , Xuanye Fang , Jiangrong Shen , Jian K. Liu , Huajin Tang , Gang Pan

Existing studies have demonstrated significant sex differences in the neural mechanisms of daily life and neuropsychiatric disorders. The hierarchical organization of the functional brain network is a critical feature for assessing these…

Neurons and Cognition · Quantitative Biology 2024-09-25 Wenyu Chen , Ling Zhan , Tao Jia

The human brain has been studied at multiple scales, from neurons, circuits, areas with well defined anatomical and functional boundaries, to large-scale functional networks which mediate coherent cognition. In a recent work, we addressed…

Biological Physics · Physics 2012-05-17 Lazaros K. Gallos , Mariano Sigman , Hernan A. Makse

The organization in brain networks shows highly modular features with weak inter-modular interaction. The topology of the networks involves emergence of modules and sub-modules at different levels of constitution governed by fractal laws.…

Neurons and Cognition · Quantitative Biology 2015-09-22 Soibam Shyamchand Singh , Khundrakpam Budhachandra Singh , Romana Ishrat , B. Indrajit Sharma , R. K. Brojen Singh

Spatially or chemically isolated functional modules composed of several cellular components and carrying discrete functions are considered fundamental building blocks of cellular organization, but their presence in highly integrated…

Soft Condensed Matter · Physics 2009-11-07 E. Ravasz , A. L. Somera , D. A. Mongru , Z. N. Oltvai , A. -L. Barabasi

The biological neural network is a vast and diverse structure with high neural heterogeneity. Conventional Artificial Neural Networks (ANNs) primarily focus on modifying the weights of connections through training while modeling neurons as…

Neural and Evolutionary Computing · Computer Science 2023-10-16 Guobin Shen , Dongcheng Zhao , Yiting Dong , Yang Li , Yi Zeng

Complex dynamical systems are often modeled as networks, with nodes representing dynamical units which interact through the network's links. Gene regulatory networks, responsible for the production of proteins inside a cell, are an example…

Statistical Mechanics · Physics 2009-09-30 Zoran Levnajić

Repeating patterns of spike sequences from a neuronal network have been proposed to be useful in the reconstruction of the network topology. Reverberations in a physiologically realistic model with various physical connection topologies…

Neurons and Cognition · Quantitative Biology 2014-07-15 Hao Song , Chun-Chung Chen , Jyh-Jang Sun , Pik-Yin Lai , C. K. Chan

Human learning is a complex phenomenon requiring flexibility to adapt existing brain function and precision in selecting new neurophysiological activities to drive desired behavior. These two attributes -- flexibility and selection -- must…

Neurons and Cognition · Quantitative Biology 2013-06-28 Danielle S. Bassett , Nicholas F. Wymbs , Mason A. Porter , Peter J. Mucha , Jean M. Carlson , Scott T. Grafton

Brain networks are expected to be modular. However, existing techniques for estimating a network's modules make it difficult to assess the influence of organizational principles such as wiring cost reduction on the detected modules. Here,…

How spiking activity reverberates through neuronal networks, how evoked and spontaneous activity interact and blend, and how the combined activities represent external stimulation are pivotal questions in neuroscience. We simulated minimal…

Neurons and Cognition · Quantitative Biology 2018-03-01 Christoph Bauermeister , Hanna Keren , Jochen Braun

The human brains are organized into hierarchically modular networks facilitating efficient and stable information processing and supporting diverse cognitive processes during the course of development. While the remarkable reconfiguration…

Neurons and Cognition · Quantitative Biology 2020-09-16 Xuyun Wen , Liming Hsu , Weili Lin , Han Zhang , Dinggang Shen

We explore the interplay between the topological relevance of a neuron and its dynamical traces in experimental cultured neuronal networks. We monitor the growth and development of these networks to characterise the evolution of their…

Adaptation and Self-Organizing Systems · Physics 2023-07-14 A. Tlaie , L. M. Ballesteros-Esteban , I. Leyva , I. Sendina-Nadal

Recent experimental advances are producing an avalanche of data on both neural connectivity and neural activity. To take full advantage of these two emerging datasets we need a framework that links them, revealing how collective neural…

Neurons and Cognition · Quantitative Biology 2020-02-27 Gabriel Koch Ocker , Krešimir Josić , Eric Shea-Brown , Michael A. Buice

Spiking Neural Networks are powerful computational modelling tools that have attracted much interest because of the bioinspired modelling of synaptic interactions between neurons. Most of the research employing spiking neurons has been…

Neural and Evolutionary Computing · Computer Science 2019-03-05 Huanneng Qiu , Matthew Garratt , David Howard , Sreenatha Anavatti

Background: Previous studies have used different methods in an effort to extract the modular organization of transcriptional regulatory networks (TRNs). However, these approaches are not natural, as they try to cluster highly connected…

Molecular Networks · Quantitative Biology 2014-05-26 Julio A. Freyre-González , José A. Alonso-Pavón , Luis G. Treviño-Quintanilla , Julio Collado-Vides

Directionality is a fundamental feature of network connections. Most structural brain networks are intrinsically directed because of the nature of chemical synapses, which comprise most neuronal connections. Due to limitations of…

Neurons and Cognition · Quantitative Biology 2018-01-19 Penelope Kale , Andrew Zalesky , Leonardo L. Gollo

The modular and hierarchical organization of the brain is believed to support the coexistence of segregated (specialization) and integrated (binding) information processes. A relevant question is yet to understand how such architecture…

Neurons and Cognition · Quantitative Biology 2025-06-19 Raphaël Bergoin , Alessandro Torcini , Gustavo Deco , Mathias Quoy , Gorka Zamora-López

Many real-world networks are directed, sparse and hierarchical, with a mixture of feed-forward and feedback connections with respect to the hierarchy. Moreover, a small number of 'master' nodes are often able to drive the whole system. We…

Disordered Systems and Neural Networks · Physics 2022-06-22 Niall Rodgers , Peter Tino , Samuel Johnson