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Data-driven cell tracking and segmentation methods in biomedical imaging require diverse and information-rich training data. In cases where the number of training samples is limited, synthetic computer-generated data sets can be used to…
We present a geometric multigrid solver based on adaptive smoothed aggregation suitable for Discontinuous Galerkin (DG) discretisations. Mesh hierarchies are formed via domain decomposition techniques, and the method is applicable to fully…
3D Gaussian Splatting (3DGS) has emerged as a promising 3D reconstruction technique. The traditional 3DGS training pipeline follows three sequential steps: Gaussian densification, Gaussian projection, and color splatting. Despite its…
An efficient $hp$-multigrid scheme is presented for local discontinuous Galerkin (LDG) discretizations of elliptic problems, formulated around the idea of separately coarsening the underlying discrete gradient and divergence operators. We…
In this work we exploit agglomeration based $h$-multigrid preconditioners to speed-up the iterative solution of discontinuous Galerkin discretizations of the Stokes and Navier-Stokes equations. As a distinctive feature $h$-coarsened mesh…
In this paper, we develop a class of high order conservative semi-Lagrangian (SL) discontinuous Galerkin (DG) methods for solving multi-dimensional linear transport equations. The methods rely on a characteristic Galerkin weak formulation,…
In this paper we analyse the convergence properties of V-cycle multigrid algorithms for the numerical solution of the linear system of equations arising from discontinuous Galerkin discretization of second-order elliptic partial…
We investigated an hybridizable discontinuous Galerkin (HDG) method for a convection diffusion Dirichlet boundary control problem in our earlier work [SIAM J. Numer. Anal. 56 (2018) 2262-2287] and obtained an optimal convergence rate for…
Increasing data set sizes of 3D microscopy imaging experiments demand for an automation of segmentation processes to be able to extract meaningful biomedical information. Due to the shortage of annotated 3D image data that can be used for…
The capability to incorporate moving geometric features within models for complex simulations is a common requirement in many fields. Fluid mechanics within aeronautical applications, for example, routinely feature rotating (e.g. turbines,…
In this work, we describe a method for large-scale 3D cell-tracking through a segmentation selection approach. The proposed method is effective at tracking cells across large microscopy datasets on two fronts: (i) It can solve problems…
Synthetic generation of three-dimensional cell models from histopathological images aims to enhance understanding of cell mutation, and progression of cancer, necessary for clinical assessment and optimal treatment. Classical reconstruction…
We introduce a nodally bound-preserving Galerkin method for second-order elliptic problems on general polygonal/polyhedral, henceforth collectively termed as \emph{polytopic}, meshes. Starting from an interior penalty discontinuous Galerkin…
Motivated by applications to numerical simulation of flows in highly heterogeneous porous media, we develop multiscale finite element methods for second order elliptic equations. We discuss a multiscale model reduction technique in the…
We present a hybrid continuous and discontinuous Galerkin spectral element approximation that leverages the advantages of each approach. The continuous Galerkin approximation is used on interior element faces where the equation properties…
The study performs large-eddy simulations of supersonic free jet flows using the Discontinuous Galerkin Spectral Element Method (DGSEM). The main objective of the present work is to assess the resolution requirements for adequate simulation…
We consider the problem of accurately identifying cell boundaries and labeling individual cells in confocal microscopy images, specifically, 3D image stacks of cells with tagged cell membranes. Precise identification of cell boundaries,…
To numerically solve a generic elliptic equation on two-dimensional domains with rectangular Cartesian grids, we propose a cut-cell geometric multigrid method that features (1) general algorithmic steps that apply to two-dimensional…
The aim of this work is to consider multiscale algorithms for solving PDEs with Galerkin methods on bounded domains. We provide results on convergence and condition numbers. We show how to handle PDEs with Dirichlet boundary conditions. We…
Elliptic partial differential equations (PDEs) frequently arise in continuum descriptions of physical processes relevant to science and engineering. Multilevel preconditioners represent a family of scalable techniques for solving discrete…