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The study of neurocognitive tasks requiring accurate localisation of activity often rely on functional Magnetic Resonance Imaging, a widely adopted technique that makes use of a pipeline of data processing modules, each involving a variety…

Computer Vision and Pattern Recognition · Computer Science 2016-10-14 Albert Vilamala , Kristoffer Hougaard Madsen , Lars Kai Hansen

As machine learning continues to gain momentum in the neuroscience community, we witness the emergence of novel applications such as diagnostics, characterization, and treatment outcome prediction for psychiatric and neurological disorders,…

Computer Vision and Pattern Recognition · Computer Science 2018-04-27 Maxim Sharaev , Alexander Andreev , Alexey Artemov , Alexander Bernstein , Evgeny Burnaev , Ekaterina Kondratyeva , Svetlana Sushchinskaya , Renat Akzhigitov

Psychiatric questionnaires are highly context sensitive and often only weakly predict subsequent symptom severity, which makes the prognostic relationship difficult to learn. Although flexible nonlinear models can improve predictive…

Machine Learning · Computer Science 2026-03-02 Eric V. Strobl

A lack of software reproducibility has become increasingly apparent in the last several years, calling into question the validity of scientific findings affected by published tools. Reproducibility issues may have numerous sources of error,…

Neurons and Cognition · Quantitative Biology 2020-04-23 Gregory Kiar , Pablo de Oliveira Castro , Pierre Rioux , Eric Petit , Shawn T. Brown , Alan C. Evans , Tristan Glatard

Magnetic resonance imaging (MRI) data is heterogeneous due to differences in device manufacturers, scanning protocols, and inter-subject variability. A conventional way to mitigate MR image heterogeneity is to apply preprocessing…

Image and Video Processing · Electrical Eng. & Systems 2023-10-24 Ekaterina Kondrateva , Polina Druzhinina , Alexandra Dalechina , Svetlana Zolotova , Andrey Golanov , Boris Shirokikh , Mikhail Belyaev , Anvar Kurmukov

The data produced by the future space-based millihertz gravitational-wave detector LISA will require nontrivial pre-processing, which might affect the science results. It is crucial to demonstrate the feasibility of such processing…

Instrumentation and Methods for Astrophysics · Physics 2023-05-22 Jean-Baptiste Bayle , Olaf Hartwig , Marc Lilley , Aurélien Hees , Christian Chapman-Bird , Graham Woan , Peter Wolf

Uncertainty estimation, which provides a means of building explainable neural networks for medical imaging applications, have mostly been studied for single deep learning models that focus on a specific task. In this paper, we propose a…

Computer Vision and Pattern Recognition · Computer Science 2023-10-02 Leonhard F. Feiner , Martin J. Menten , Kerstin Hammernik , Paul Hager , Wenqi Huang , Daniel Rueckert , Rickmer F. Braren , Georgios Kaissis

We present a pipeline for unbiased and robust multimodal registration of neuroimaging modalities with minimal pre-processing. While typical multimodal studies need to use multiple independent processing pipelines, with diverse options and…

Computer Vision and Pattern Recognition · Computer Science 2024-01-26 Adria Casamitjana , Juan Eugenio Iglesias , Raul Tudela , Aida Ninerola-Baizan , Roser Sala-Llonch

Appropriate preprocessing is a fundamental prerequisite for analyzing a noisy dataset. The purpose of this paper is to apply a nonparametric preprocessing method, called Singular Spectrum Analysis (SSA), to a variety of datasets which are…

Methodology · Statistics 2022-03-14 Maryam Movahedifar , Thorsten Dickhaus

Deep learning has been widely applied in neuroimaging, including predicting brain-phenotype relationships from magnetic resonance imaging (MRI) volumes. MRI data usually requires extensive preprocessing prior to modeling, but variation…

Machine Learning · Computer Science 2023-10-17 Xinhui Li , Alex Fedorov , Mrinal Mathur , Anees Abrol , Gregory Kiar , Sergey Plis , Vince Calhoun

Translating neural networks from theory to clinical practice has unique challenges, specifically in the field of neuroimaging. In this paper, we present DeepNeuro, a deep learning framework that is best-suited to putting deep learning…

Computer Vision and Pattern Recognition · Computer Science 2018-08-15 Andrew Beers , James Brown , Ken Chang , Katharina Hoebel , Elizabeth Gerstner , Bruce Rosen , Jayashree Kalpathy-Cramer

A data analysis pipeline is a structured sequence of steps that transforms raw data into meaningful insights by integrating various analysis algorithms. In this paper, we propose a novel statistical test to assess the significance of data…

Machine Learning · Statistics 2024-10-15 Tomohiro Shiraishi , Tatsuya Matsukawa , Shuichi Nishino , Ichiro Takeuchi

Spectrum sensing and analysis is crucial for a variety of reasons, including regulatory compliance, interference detection and mitigation, and spectrum resource planning and optimization. Effective, real-time spectrum analysis remains a…

Signal Processing · Electrical Eng. & Systems 2026-01-21 Rahil Gandotra , Ruoyu Sun , Mark Poletti , Jiayu Mao , Hao Guo

Sensitivity analyses of simulation ensembles determine how simulation parameters influence the simulation's outcome. Commonly, one global numerical sensitivity value is computed per simulation parameter. However, when considering 3D spatial…

Human-Computer Interaction · Computer Science 2024-08-08 Marina Evers , Simon Leistikow , Hennes Rave , Lars Linsen

Traditional neuroimage analysis pipelines involve computationally intensive, time-consuming optimization steps, and thus, do not scale well to large cohort studies with thousands or tens of thousands of individuals. In this work we propose…

Image and Video Processing · Electrical Eng. & Systems 2020-06-11 Leonie Henschel , Sailesh Conjeti , Santiago Estrada , Kersten Diers , Bruce Fischl , Martin Reuter

With the arrival of a number of wide-field snapshot image-plane radio transient surveys, there will be a huge influx of images in the coming years making it impossible to manually analyse the datasets. Automated pipelines to process the…

Many creative ideas are being proposed for image sensor designs, and these may be useful in applications ranging from consumer photography to computer vision. To understand and evaluate each new design, we must create a corresponding image…

Computer Vision and Pattern Recognition · Computer Science 2017-10-11 Haomiao Jiang , Qiyuan Tian , Joyce Farrell , Brian Wandell

Traditionally, in Audio Recognition pipeline, noise is suppressed by the "frontend", relying on preprocessing techniques such as speech enhancement. However, it is not guaranteed that noise will not cascade into downstream pipelines. To…

Sound · Computer Science 2022-08-01 Juncheng B Li , Zheng Wang , Shuhui Qu , Florian Metze

Background: We describe an informatics framework for researchers and clinical investigators to efficiently perform parameter sensitivity analysis and auto-tuning for algorithms that segment and classify image features in a large dataset of…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-12-13 George Teodoro , Tahsin Kurc , Luis F. R. Taveira , Alba C. M. A. Melo , Jun Kong , Joel Saltz

With fast advancements in technologies, the collection of multiple types of measurements on a common set of subjects is becoming routine in science. Some notable examples include multimodal neuroimaging studies for the simultaneous…

Methodology · Statistics 2019-08-30 Yi Zhao , Lexin Li , Brian S. Caffo
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