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Segmentation of cellular structures in electron microscopy (EM) images is fundamental to analyzing the morphology of neurons and glial cells in the healthy and diseased brain tissue. Current neuronal segmentation applications are based on…

Computer Vision and Pattern Recognition · Computer Science 2024-11-06 Zewen Zhuo , Ilya Belevich , Ville Leinonen , Eija Jokitalo , Tarja Malm , Alejandra Sierra , Jussi Tohka

Vertebral detection and segmentation are critical steps for treatment planning in spine surgery and radiation therapy. Accurate identification and segmentation are complicated in imaging that does not include the full spine, in cases with…

Image and Video Processing · Electrical Eng. & Systems 2023-11-17 Geoff Klein , Michael Hardisty , Cari Whyne , Anne L. Martel

Lumbar disk segmentation is essential for diagnosing and curing spinal disorders by enabling precise detection of disk boundaries in medical imaging. The advent of deep learning has resulted in the development of many segmentation methods,…

Image and Video Processing · Electrical Eng. & Systems 2024-12-30 Serkan Salturk , Irem Sayin , Ibrahim Cem Balci , Taha Emre Pamukcu , Zafer Soydan , Huseyin Uvet

The most recent fast and accurate image segmentation methods are built upon fully convolutional deep neural networks. In this paper, we propose new deep learning strategies for DenseNets to improve segmenting images with subtle differences…

Computer Vision and Pattern Recognition · Computer Science 2018-12-11 Seyed Raein Hashemi , Sanjay P. Prabhu , Simon K. Warfield , Ali Gholipour

Spine-related diseases have high morbidity and cause a huge burden of social cost. Spine imaging is an essential tool for noninvasively visualizing and assessing spinal pathology. Segmenting vertebrae in computed tomography (CT) images is…

Image and Video Processing · Electrical Eng. & Systems 2024-10-04 Yang Deng , Ce Wang , Yuan Hui , Qian Li , Jun Li , Shiwei Luo , Mengke Sun , Quan Quan , Shuxin Yang , You Hao , Pengbo Liu , Honghu Xiao , Chunpeng Zhao , Xinbao Wu , S. Kevin Zhou

Quantitative, volumetric analysis of Magnetic Resonance Imaging (MRI) is a fundamental way researchers study the brain in a host of neurological conditions including normal maturation and aging. Despite the availability of open-source brain…

Quantitative Methods · Quantitative Biology 2019-11-15 Aakash Kaku , Chaitra V. Hegde , Jeffrey Huang , Sohae Chung , Xiuyuan Wang , Matthew Young , Alireza Radmanesh , Yvonne W. Lui , Narges Razavian

Segmentation and labeling of vertebrae in MRI images of the spine are critical for the diagnosis of illnesses and abnormalities. These steps are indispensable as MRI technology provides detailed information about the tissue structure of the…

Computer Vision and Pattern Recognition · Computer Science 2024-04-30 Rikathi Pal , Priya Saha , Somoballi Ghoshal , Amlan Chakrabarti , Susmita Sur-Kolay

Endoscopic surgery is currently an important treatment method in the field of spinal surgery and avoiding damage to the spinal nerves through video guidance is a key challenge. This paper presents the first real-time segmentation method for…

Computer Vision and Pattern Recognition · Computer Science 2023-07-21 Shaowu Peng , Pengcheng Zhao , Yongyu Ye , Junying Chen , Yunbing Chang , Xiaoqing Zheng

Automatic identification of brain lesions from magnetic resonance imaging (MRI) scans of stroke survivors would be a useful aid in patient diagnosis and treatment planning. We propose a multi-modal multi-path convolutional neural network…

Computer Vision and Pattern Recognition · Computer Science 2019-05-28 Yunzhe Xue , Fadi G. Farhat , Olga Boukrina , A . M. Barrett , Jeffrey R. Binder , Usman W. Roshan , William W. Graves

In the paper, we present an approach for learning a single model that universally segments 33 anatomical structures, including vertebrae, pelvic bones, and abdominal organs. Our model building has to address the following challenges.…

Image and Video Processing · Electrical Eng. & Systems 2022-03-07 Pengbo Liu , Yang Deng , Ce Wang , Yuan Hui , Qian Li , Jun Li , Shiwei Luo , Mengke Sun , Quan Quan , Shuxin Yang , You Hao , Honghu Xiao , Chunpeng Zhao , Xinbao Wu , S. Kevin Zhou

One of the most common tasks in medical imaging is semantic segmentation. Achieving this segmentation automatically has been an active area of research, but the task has been proven very challenging due to the large variation of anatomy…

Computer Vision and Pattern Recognition · Computer Science 2018-04-10 Holger R. Roth , Chen Shen , Hirohisa Oda , Masahiro Oda , Yuichiro Hayashi , Kazunari Misawa , Kensaku Mori

Data driven segmentation is an important initial step of shape prior-based segmentation methods since it is assumed that the data term brings a curve to a plausible level so that shape and data terms can then work together to produce better…

Image and Video Processing · Electrical Eng. & Systems 2019-02-19 Ertunc Erdil , Ali Ozgur Argunsah , Tolga Tasdizen , Devrim Unay , Mujdat Cetin

Purpose Automated segmentation of anatomical structures in medical image analysis is a prerequisite for autonomous diagnosis as well as various computer and robot aided interventions. Recent methods based on deep convolutional neural…

Computer Vision and Pattern Recognition · Computer Science 2020-09-22 Max-Heinrich Laves , Jens Bicker , Lüder A. Kahrs , Tobias Ortmaier

Many functional and structural neuroimaging studies call for accurate morphometric segmentation of different brain structures starting from image intensity values of MRI scans. Current automatic (multi-) atlas-based segmentation strategies…

Image and Video Processing · Electrical Eng. & Systems 2019-09-27 Dennis Bontempi , Sergio Benini , Alberto Signoroni , Michele Svanera , Lars Muckli

Spinal surgery planning necessitates automatic segmentation of vertebrae in cone-beam computed tomography (CBCT), an intraoperative imaging modality that is widely used in intervention. However, CBCT images are of low-quality and…

Image and Video Processing · Electrical Eng. & Systems 2021-03-10 Yuanyuan Lyu , Haofu Liao , Heqin Zhu , S. Kevin Zhou

Computer vision has transformed medical diagnosis, treatment, and research through advanced image processing and machine learning techniques. Fracture classification, a critical area in healthcare, has greatly benefited from these…

Image and Video Processing · Electrical Eng. & Systems 2025-03-24 Snigdha Paul , Sambit Mallick , Anindya Sen

Recent advancements in medical image segmentation techniques have achieved compelling results. However, most of the widely used approaches do not take into account any prior knowledge about the shape of the biomedical structures being…

Image and Video Processing · Electrical Eng. & Systems 2019-09-18 Zhou He , Siqi Bao , Albert Chung

In this work we present a method of automatic segmentation of defective skulls for custom cranial implant design and 3D printing purposes. Since such tissue models are usually required in patient cases with complex anatomical defects and…

Image and Video Processing · Electrical Eng. & Systems 2020-11-05 Oldřich Kodym , Michal Španěl , Adam Herout

Cone-beam computed tomography (CBCT) has become an invaluable imaging modality in dentistry, enabling 3D visualization of teeth and surrounding structures for diagnosis and treatment planning. Automated segmentation of dental structures in…

Computer Vision and Pattern Recognition · Computer Science 2025-08-19 Dominic LaBella , Keshav Jha , Jared Robbins , Esther Yu

Statistical shape modeling is an important tool to characterize variation in anatomical morphology. Typical shapes of interest are measured using 3D imaging and a subsequent pipeline of registration, segmentation, and some extraction of…

Computer Vision and Pattern Recognition · Computer Science 2018-10-02 Riddhish Bhalodia , Shireen Y. Elhabian , Ladislav Kavan , Ross T. Whitaker