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The development of systemic approaches in biology has put emphasis on identifying genetic modules whose behavior can be modeled accurately so as to gain insight into their structure and function. However most gene circuits in a cell are…

Molecular Networks · Quantitative Biology 2010-12-10 Quentin Thommen , Benjamin Pfeuty , Pierre-Emmanuel Morant , Florence Corellou , François-Yves Bouget , Marc Lefranc

We propose a stochastic dynamical model of noisy neural networks with complex architectures and discuss activation of neural networks by a stimulus, pacemakers and spontaneous activity. This model has a complex phase diagram with…

Disordered Systems and Neural Networks · Physics 2015-05-13 A. V. Goltsev , F. V. de Abreu , S. N. Dorogovtsev , J. F. F. Mendes

The Jansen-Rit model of a cortical column in the cerebral cortex is widely used to simulate spontaneous brain activity (EEG) and event-related potentials. It couples a pyramidal cell population with two interneuron populations, of which one…

Dynamical Systems · Mathematics 2025-02-11 Huda Mahdi , Jan Sieber , Krasimira Tsaneva-Atanasova

A wide range of organisms use circadian clocks to keep internal sense of daily time and regulate their behavior accordingly. Most of these clocks use intracellular genetic networks based on positive and negative regulatory elements. The…

Biological Physics · Physics 2009-11-07 Jose M. G. Vilar , Hao Yuan Kueh , Naama Barkai , Stanislas Leibler

In this work we study the detection of weak stimuli by spiking neurons in the presence of certain level of noisy background neural activity. Our study has focused in the realistic assumption that the synapses in the network present…

Neurons and Cognition · Quantitative Biology 2009-06-04 Jorge F. Mejias , Joaquin J. Torres

Ring oscillators are biochemical circuits consisting of a ring of interactions capable of sustained oscillations. The non-linear interactions between genes hinder the analytical insight into their function, usually requiring computational…

Molecular Networks · Quantitative Biology 2018-02-19 Karen M. Page , Ruben Perez-Carrasco

Ensembles of phase-oscillators are known to exhibit a variety of collective regimes. Here, we show that a simple mean-field model involving two heterogenous populations of pulse-coupled oscillators, exhibits, in the strong-coupling limit, a…

Disordered Systems and Neural Networks · Physics 2024-07-12 German Mato , Antonio Politi , Alessandro Torcini

Adapting to regularities of the environment is critical for biological organisms to anticipate events and plan. A prominent example is the circadian rhythm corresponding to the internalization by organisms of the $24$-hour period of the…

Artificial Intelligence · Computer Science 2023-07-25 Aqeel Labash , Florian Fletzer , Daniel Majoral , Raul Vicente

Astrocytes play a central role in inducing concerted phase synchronized neural-wave patterns inside the brain. In this article, we demonstrate that injected radio-frequency signal in underlying heavy metal layer of spin-orbit torque…

Emerging Technologies · Computer Science 2021-09-17 Umang Garg , Kezhou Yang , Abhronil Sengupta

Although stochastic resonance phenomena are ubiquitous across various complex systems, the influence mechanisms of higher-order interactions remain elusive. Here, we address this gap by investigating stochastic resonance in coupled phase…

Adaptation and Self-Organizing Systems · Physics 2026-03-16 Zheng Wang , Jinjie Zhu , Xianbin Liu

Recurrent neural networks (RNNs) are machine learning models widely used for learning temporal relationships. Current state-of-the-art RNNs use integrating or spiking neurons -- two classes of computing units whose outputs depend directly…

Neural and Evolutionary Computing · Computer Science 2025-06-10 Peter DelMastro , Arjun Karuvally , Hananel Hazan , Hava Siegelmann , Edward Rietman

We consider large networks of theta neurons on a ring, synaptically coupled with an asymmetric kernel. Such networks support stable "bumps" of activity, which move along the ring if the coupling kernel is asymmetric. We investigate the…

Adaptation and Self-Organizing Systems · Physics 2023-06-21 Carlo R. Laing , Oleh Omel'chenko

Cortical oscillations are thought to be involved in many cognitive functions and processes. Several mechanisms have been proposed to regulate oscillations. One prominent but understudied mechanism is gap-junctional coupling. Gap junctions…

Neurons and Cognition · Quantitative Biology 2018-07-04 Guillaume Pernelle , Wilten Nicola , Claudia Clopath

Larval zebrafish exhibit a variety of complex undulatory swimming patterns. This repertoire is controlled by the 300 neurons projecting from brain into spinal cord. Understanding how descending control signals shape the output of spinal…

Neurons and Cognition · Quantitative Biology 2007-05-23 Scott A. Hill , Xiao-Ping Liu , Melissa A. Borla , Jorge V. Jose , Donald M. O'Malley

When brain signals are recorded in an electroencephalogram or some similar large-scale record of brain activity, oscillatory patterns are typically observed that are thought to reflect the aggregate electrical activity of the underlying…

Neurons and Cognition · Quantitative Biology 2013-06-04 Andre Nathan , Valmir C. Barbosa

Rhythmogenesis, which is critical for many biological functions, involves a transition to coherent activity through cell-cell communication. In the absence of centralized coordination by specialized cells (pacemakers), competing oscillating…

Adaptation and Self-Organizing Systems · Physics 2019-12-17 Ria Ghosh , Pavithraa Seenivasan , Shakti N. Menon , S. Sridhar , Nicolas B. Garnier , Alain Pumir , Sitabhra Sinha

The brain of mammals are divided into different cortical areas that are anatomically connected forming larger networks which perform cognitive tasks. The cat cerebral cortex is composed of 65 areas organised into the visual, auditory,…

Neurons and Cognition · Quantitative Biology 2015-03-10 Ewandson L. Lameu , Fernando S. Borges , Rafael R. Borges , Antonio M. Batista , Murilo S. Baptista , Ricardo L. Viana

Entrainment of randomly coupled oscillator networks by periodic external forcing applied to a subset of elements is numerically and analytically investigated. For a large class of interaction functions, we find that the entrainment window…

Disordered Systems and Neural Networks · Physics 2015-06-25 Hiroshi Kori , Alexander S. Mikhailov

We investigate here various properties of the responses of excitable systems subject to periodic forcing and noise. While the properties of intrinsic oscillators, subject to added periodic signals, are well understood, much less is known…

Neurons and Cognition · Quantitative Biology 2025-10-22 Jonathan E. Rubin , Justyna Signerska-Rynkowska , Jonathan Touboul

We use a computational model to propose a physiological mechanism by which transient control of beta oscillations in the indirect pathway of the basal ganglia is orchestrated at the cellular level. Our model includes a simple and robust…

Neurons and Cognition · Quantitative Biology 2013-11-12 Julie Dethier , Guillaume Drion , Alessio Franci , Rodolphe Sepulchre