Related papers: On de Bruijn Covering Sequences and Arrays
Locally repairable codes (LRCs) are a class of codes designed for the local correction of erasures. They have received considerable attention in recent years due to their applications in distributed storage. Most existing results on LRCs do…
A doubling chart on an $n$-dimensional complex manifold $Y$ is a univalent analytic mapping $\psi:B_1\to Y$ of the unit ball in $\mathbb{C}^n$, which is extendible to the (say) four times larger concentric ball of $B_1$. A doubling covering…
De novo DNA assembly is a fundamental task in Bioinformatics, and finding Eulerian paths on de Bruijn graphs is one of the dominant approaches to it. In most of the cases, there may be no one order for the de Bruijn graph that works well…
Context: Detecting arrays are mathematical structures aimed at fault identification in combinatorial interaction testing. However, they cannot be directly applied to systems that have constraints among test parameters. Such constraints are…
A new approach for designing bilayer and multi-layer LDPC codes is proposed and studied in the asymptotic regime. The ensembles are defined through individual uni-variate degree distributions, one for each layer. We present a construction…
Braided convolutional codes (BCCs) are a class of spatially coupled turbo-like codes that can be described by a $(2,3)$-regular compact graph. In this paper, we introduce a family of $(d_v,d_c)$-regular GLDPC codes with convolutional code…
In this article, we show how to transform a colored de Bruijn graph (dBG) into a practical index for processing massive sets of sequencing reads. Similar to previous works, we encode an instance of a colored dBG of the set using BOSS and a…
In this paper infinite families of linear binary nested completely regular codes are constructed. They have covering radius $\rho$ equal to $3$ or $4$, and are $1/2^i$-th parts, for $i\in\{1,\ldots,u\}$ of binary (respectively, extended…
A \textbf{double-change covering design} (DCCD) is a $v$-set $V$ and an ordered list $\mathcal{L}$ of $b$ blocks of size $k$ where every pair from $V$ must occur in at least one block and each pair of consecutive blocks differs by exactly…
The aim of this paper is to determine the algebraic structure of multidimensional cyclic codes over a finite chain ring $\mathfrak{R}$. An algorithm to find the generator polynomials of $n$ dimensional ($n$D) cyclic codes of length…
A new method to construct $q$-ary complementary sequence (or array) sets (CSSs) and complete complementary codes (CCCs) of size $N$ is introduced in this paper. An algorithm on how to compute the explicit form of the functions in…
The problem of assembling DNA fragments starting from imperfect strings given by a sequencer, classified as NP hard when trying to get perfect answers, has a huge importance in several fields, because of its relation with the possibility of…
We consider the problem of encoding two-dimensional arrays, whose elements come from a total order, for answering \topk{} queries. The aim is to obtain encodings that use space close to the information-theoretic lower bound, which can be…
Linear complementary dual (LCD) codes can provide an optimum linear coding solution for the two-user binary adder channel. LCD codes also can be used to against side-channel attacks and fault non-invasive attacks. Let $d_{LCD}(n, k)$ denote…
Two novel decoupling and matching networks (DMNs) in microstrip technology for three-element uniform circular arrays (UCAs) are investigated and compared to a more conventional DMN approach with simple neutralization lines. The array…
We investigate retransmission permutation arrays (RPAs) that are motivated by applications in overlapping channel transmissions. An RPA is an $n\times n$ array in which each row is a permutation of ${1, ..., n}$, and for $1\leq i\leq n$,…
Let $M(n,d)$ be the maximum size of a permutation array on $n$ symbols with pairwise Hamming distance at least $d$. Some permutation arrays can be constructed using blocks of certain type [2] called product blocks in this paper. We study…
A known Kronecker construction of completely regular codes has been investigated taking different alphabets in the component codes. This approach is also connected with lifting constructions of completely regular codes. We obtain several…
Fix integers $n \ge r \ge 2$. A clique partition of ${[n] \choose r}$ is a collection of proper subsets $A_1, A_2, \ldots, A_t \subset [n]$ such that $\bigcup_i{A_i \choose r}$ is a partition of ${[n] \choose r}$. Let $\cp(n,r)$ denote the…
We propose a construction of de Bruijn sequences by the cycle joining method from linear feedback shift registers (LFSRs) with arbitrary characteristic polynomial $f(x)$. We study in detail the cycle structure of the set $\Omega(f(x))$ that…