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Motivation: Human genomic datasets often contain sensitive information that limits use and sharing of the data. In particular, simple anonymisation strategies fail to provide sufficient level of protection for genomic data, because the data…

Quantitative Methods · Quantitative Biology 2019-08-27 Teppo Niinimäki , Mikko Heikkilä , Antti Honkela , Samuel Kaski

Transfer learning is crucial in training deep neural networks on new target tasks. Current transfer learning methods always assume at least one of (i) source and target task label spaces overlap, (ii) source datasets are available, and…

Machine Learning · Computer Science 2025-02-21 Shin'ya Yamaguchi , Sekitoshi Kanai , Atsutoshi Kumagai , Daiki Chijiwa , Hisashi Kashima

Accurately modeling the protein fitness landscapes holds great importance for protein engineering. Recently, due to their capacity and representation ability, pre-trained protein language models have achieved state-of-the-art performance in…

Biomolecules · Quantitative Biology 2024-02-06 Ziyi Zhou , Liang Zhang , Yuanxi Yu , Mingchen Li , Liang Hong , Pan Tan

Chemical Language Models (CLMs) pre-trained on large scale molecular data are widely used for molecular property prediction. However, the common belief that increasing training resources such as model size, dataset size, and training…

Machine Learning · Computer Science 2026-05-14 Tatsuya Sagawa , Ryosuke Kojima

Constructing first principles models is a challenging task for nonlinear and complex systems such as a wastewater treatment unit. In recent years, data-driven models are widely used to overcome the complexity. However, they often suffer…

Machine Learning · Computer Science 2024-01-23 Ece S. Koksal , Erdal Aydin

Limited availability of annotated medical imaging data poses a challenge for deep learning algorithms. Although transfer learning minimizes this hurdle in general, knowledge transfer across disparate domains is shown to be less effective.…

Computer Vision and Pattern Recognition · Computer Science 2020-05-26 Jitender Singh Virk , Deepti R. Bathula

The objective of this study is to evaluate whether the number of requisite training samples can be reduced with the use of various transfer learning models for predicting, for example, the chemical source terms of the data-driven…

Chemical Physics · Physics 2024-12-18 Ki Sung Jung , Tarek Echekki , Jacqueline H. Chen , Mohammad Khalil

Active learning is an iterative labeling process that is used to obtain a small labeled subset, despite the absence of labeled data, thereby enabling to train a model for supervised tasks such as text classification. While active learning…

Computation and Language · Computer Science 2024-10-07 Christopher Schröder , Gerhard Heyer

In the field of chemistry, the objective is to create novel molecules with desired properties, facilitating accurate property predictions for applications such as material design and drug screening. However, existing graph deep learning…

Machine Learning · Computer Science 2024-08-28 Sakhinana Sagar Srinivas , Venkataramana Runkana

In the context of radio galaxy classification, most state-of-the-art neural network algorithms have been focused on single survey data. The question of whether these trained algorithms have cross-survey identification ability or can be…

Instrumentation and Methods for Astrophysics · Physics 2019-07-31 Hongming Tang , Anna M. M. Scaife , J. P. Leahy

Transfer Learning methods are widely used in satellite image segmentation problems and improve performance upon classical supervised learning methods. In this study, we present a semantic segmentation method that allows us to make land…

Computer Vision and Pattern Recognition · Computer Science 2022-12-06 Metehan Yalçın , Ahmet Alp Kındıroğlu , Furkan Burak Bağcı , Ufuk Uyan , Mahiye Uluyağmur Öztürk

Data-driven methods -- such as machine learning and time series forecasting -- are widely used for sales forecasting in the food retail domain. However, for newly introduced products insufficient training data is available to train accurate…

Machine Learning · Computer Science 2020-05-15 Tristan Karb , Niklas Kühl , Robin Hirt , Varvara Glivici-Cotruta

There are numerous advantages of deep neural network surrogate modeling for response time-history prediction. However, due to the high cost of refined numerical simulations and actual experiments, the lack of data has become an unavoidable…

Machine Learning · Computer Science 2023-06-16 Yongjia Xu , Xinzheng Lu , Yifan Fei , Yuli Huang

Transfer learning aims to leverage knowledge from pre-trained models to benefit the target task. Prior transfer learning work mainly transfers from a single model. However, with the emergence of deep models pre-trained from different…

Machine Learning · Computer Science 2022-11-07 Yang Shu , Zhangjie Cao , Ziyang Zhang , Jianmin Wang , Mingsheng Long

A major impediment to the application of deep learning to real-world problems is the scarcity of labeled data. Small training sets are in fact of no use to deep networks as, due to the large number of trainable parameters, they will very…

Computer Vision and Pattern Recognition · Computer Science 2018-05-29 Ismail Elezi , Alessandro Torcinovich , Sebastiano Vascon , Marcello Pelillo

Development of comprehensive prediction models are often of great interest in many disciplines of science, but datasets with information on all desired features often have small sample sizes. We describe a transfer learning approach for…

Methodology · Statistics 2024-08-20 Ruzhang Zhao , Prosenjit Kundu , Arkajyoti Saha , Nilanjan Chatterjee

Parameter fine tuning is a transfer learning approach whereby learned parameters from pre-trained source network are transferred to the target network followed by fine-tuning. Prior research has shown that this approach is capable of…

Computer Vision and Pattern Recognition · Computer Science 2019-09-20 Tasfia Shermin , Shyh Wei Teng , Manzur Murshed , Guojun Lu , Ferdous Sohel , Manoranjan Paul

The calculation of reactive properties is a challenging task in chemical reaction discovery. Machine learning (ML) methods play an important role in accelerating electronic structure predictions of activation energies and reaction…

Chemical Physics · Physics 2025-05-02 Joe Gilkes , Mark Storr , Reinhard J. Maurer , Scott Habershon

Semi-supervised learning is a challenging problem which aims to construct a model by learning from a limited number of labeled examples. Numerous methods have been proposed to tackle this problem, with most focusing on utilizing the…

Computer Vision and Pattern Recognition · Computer Science 2021-07-02 Peng Tu , Yawen Huang , Rongrong Ji , Feng Zheng , Ling Shao

Transfer learning has emerged as a powerful technique for improving the performance of machine learning models on new domains where labeled training data may be scarce. In this approach a model trained for a source task, where plenty of…

Machine Learning · Computer Science 2020-06-19 Seyed Mohammadreza Mousavi Kalan , Zalan Fabian , A. Salman Avestimehr , Mahdi Soltanolkotabi