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Knowledge graphs enable data scientists to learn end-to-end on heterogeneous knowledge. However, most end-to-end models solely learn from the relational information encoded in graphs' structure: raw values, encoded as literal nodes, are…

Machine Learning · Computer Science 2023-09-06 W. X. Wilcke , P. Bloem , V. de Boer , R. H. van t Veer

This technical report provides extra details of the deep multimodal similarity model (DMSM) which was proposed in (Fang et al. 2015, arXiv:1411.4952). The model is trained via maximizing global semantic similarity between images and their…

Computer Vision and Pattern Recognition · Computer Science 2015-04-29 Xiaodong He , Rupesh Srivastava , Jianfeng Gao , Li Deng

Negative medical findings are prevalent in clinical reports, yet discriminating them from positive findings remains a challenging task for information extraction. Most of the existing systems treat this task as a pipeline of two separate…

Computation and Language · Computer Science 2020-01-23 Parminder Bhatia , Busra Celikkaya , Mohammed Khalilia

We propose a method to teach multiple large language models (LLM) to collaborate by interleaving their generations at the token level. We model the decision of which LLM generates the next token as a latent variable. By optimizing the…

Computation and Language · Computer Science 2024-08-28 Shannon Zejiang Shen , Hunter Lang , Bailin Wang , Yoon Kim , David Sontag

Tremendous variation in the scale of people/head size is a critical problem for crowd counting. To improve the scale invariance of feature representation, recent works extensively employ Convolutional Neural Networks with multi-column…

Computer Vision and Pattern Recognition · Computer Science 2019-09-18 Zhi-Qi Cheng , Jun-Xiu Li , Qi Dai , Xiao Wu , Jun-Yan He , Alexander Hauptmann

This paper explores the intersection of Discrete Choice Modeling (DCM) and machine learning, focusing on the integration of image data into DCM's utility functions and its impact on model interpretability. We investigate the consequences of…

Computer Vision and Pattern Recognition · Computer Science 2023-12-25 Brian Sifringer , Alexandre Alahi

In digital pathology, both detection and classification of cells are important for automatic diagnostic and prognostic tasks. Classifying cells into subtypes, such as tumor cells, lymphocytes or stromal cells is particularly challenging.…

Computer Vision and Pattern Recognition · Computer Science 2022-06-07 Shahira Abousamra , David Belinsky , John Van Arnam , Felicia Allard , Eric Yee , Rajarsi Gupta , Tahsin Kurc , Dimitris Samaras , Joel Saltz , Chao Chen

Multimodal single-cell technologies enable the simultaneous collection of diverse data types from individual cells, enhancing our understanding of cellular states. However, the integration of these datatypes and modeling the…

Machine Learning · Computer Science 2023-11-22 Bhavya Mehta , Nirmit Deliwala , Madhav Chandane

Recent advances in deep learning have enabled the development of automated frameworks for analysing medical images and signals, including analysis of cervical cancer. Many previous works focus on the analysis of isolated cervical cells, or…

Computer Vision and Pattern Recognition · Computer Science 2024-03-06 Ruiqi Wang , Mohammad Ali Armin , Simon Denman , Lars Petersson , David Ahmedt-Aristizabal

Neural models have become ubiquitous in automatic speech recognition systems. While neural networks are typically used as acoustic models in more complex systems, recent studies have explored end-to-end speech recognition systems based on…

Computation and Language · Computer Science 2017-09-15 Yonatan Belinkov , James Glass

Dense retrieval models use bi-encoder network architectures for learning query and document representations. These representations are often in the form of a vector representation and their similarities are often computed using the dot…

Information Retrieval · Computer Science 2023-05-01 Hamed Zamani , Michael Bendersky

Motivation: State-of-the-art biomedical named entity recognition (BioNER) systems often require handcrafted features specific to each entity type, such as genes, chemicals and diseases. Although recent studies explored using neural network…

Information Retrieval · Computer Science 2018-10-09 Xuan Wang , Yu Zhang , Xiang Ren , Yuhao Zhang , Marinka Zitnik , Jingbo Shang , Curtis Langlotz , Jiawei Han

Tabular deep-learning methods require embedding numerical and categorical input features into high-dimensional spaces before processing them. Existing methods deal with this heterogeneous nature of tabular data by employing separate…

Machine Learning · Computer Science 2025-02-18 Boshko Koloski , Andrei Margeloiu , Xiangjian Jiang , Blaž Škrlj , Nikola Simidjievski , Mateja Jamnik

Neural translation models have proven to be effective in capturing sufficient information from a source sentence and generating a high-quality target sentence. However, it is not easy to get the best effect for bidirectional translation,…

Computation and Language · Computer Science 2020-11-25 Parnia Bahar , Christopher Brix , Hermann Ney

We view molecular optimization as a graph-to-graph translation problem. The goal is to learn to map from one molecular graph to another with better properties based on an available corpus of paired molecules. Since molecules can be…

Machine Learning · Computer Science 2019-01-30 Wengong Jin , Kevin Yang , Regina Barzilay , Tommi Jaakkola

The objective of this work is set-based face recognition, i.e. to decide if two sets of images of a face are of the same person or not. Conventionally, the set-wise feature descriptor is computed as an average of the descriptors from…

Computer Vision and Pattern Recognition · Computer Science 2018-07-25 Weidi Xie , Andrew Zisserman

It is common for people to create different types of charts to explore a multi-dimensional dataset (table). However, to recommend commonly composed charts in real world, one should take the challenges of efficiency, imbalanced data and…

Databases · Computer Science 2021-06-29 Mengyu Zhou , Qingtao Li , Xinyi He , Yuejiang Li , Yibo Liu , Wei Ji , Shi Han , Yining Chen , Daxin Jiang , Dongmei Zhang

Protein function is inherently linked to its localization within the cell, and fluorescent microscopy data is an indispensable resource for learning representations of proteins. Despite major developments in molecular representation…

Quantitative Methods · Quantitative Biology 2022-05-25 Anastasia Razdaibiedina , Alexander Brechalov

A relation tuple consists of two entities and the relation between them, and often such tuples are found in unstructured text. There may be multiple relation tuples present in a text and they may share one or both entities among them.…

Computation and Language · Computer Science 2019-11-25 Tapas Nayak , Hwee Tou Ng

Deep Learning has been widely applied in the area of image processing and natural language processing. In this paper, we propose an end-to-end communication structure based on autoencoder where the transceiver can be optimized jointly. A…

Information Theory · Computer Science 2019-06-18 Tianjie Mu , Xiaohui Chen , Li Chen , Huarui Yin , Weidong Wang