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The conformational kinetics of enzymes can be reliably revealed when they are governed by Markovian dynamics. Hidden Markov Models (HMMs) are appropriate especially in the case of conformational states that are hardly distinguishable.…

Quantitative Methods · Quantitative Biology 2009-02-05 A. Kovalev , N. Zarrabi , F. Werz , M. Boersch , Z. Ristic , H. Lill , D. Bald , C. Tietz , J. Wrachtrup

Employing a new machine learning method, named hierarchical extreme learning machine (HELM) algorithm, we identified 56 hot subdwarf stars in the first data release (DR1) of the Large Sky Area Multi-Object Fibre Spectroscopic Telescope…

Solar and Stellar Astrophysics · Physics 2019-07-02 Zhenxin Lei , Yude Bu , Jingkun Zhao , Péter Németh , Gang Zhao

We present a new algorithm for discovering patterns in time series and other sequential data. We exhibit a reliable procedure for building the minimal set of hidden, Markovian states that is statistically capable of producing the behavior…

Machine Learning · Computer Science 2007-05-23 Cosma Rohilla Shalizi , Kristina Lisa Shalizi , James P. Crutchfield

Ecological systems can often be characterised by changes among a finite set of underlying states pertaining to individuals, populations, communities, or entire ecosystems through time. Owing to the inherent difficulty of empirical field…

Quantitative Methods · Quantitative Biology 2020-11-12 Brett T. McClintock , Roland Langrock , Olivier Gimenez , Emmanuelle Cam , David L. Borchers , Richard Glennie , Toby A. Patterson

A workload analysis technique is presented that processes data from operation type traces and creates a Hidden Markov Model (HMM) to represent the workload that generated those traces. The HMM can be used to create representative traces for…

Performance · Computer Science 2012-09-18 P. G. Harrison , S. K. Harrison , N. M. Patel , S. Zertal

Stellar flares occasionally present a $\textit{peak-bump}$ light curve morphology, consisting of an initial impulsive phase followed by a gradual late phase. Analyzing this specific morphology can uncover the underlying physics of stellar…

Solar and Stellar Astrophysics · Physics 2025-03-21 Denise G. Yudovich , Kai E. Yang , Xudong Sun

The Hidden Markov Model (HMM) is one of the most widely used statistical models for sequential data analysis. One of the key reasons for this versatility is the ability of HMM to deal with missing data. However, standard HMM learning…

Machine Learning · Statistics 2023-07-04 Binyamin Perets , Mark Kozdoba , Shie Mannor

In this paper, we explore the effectiveness of dynamic analysis techniques for identifying malware, using Hidden Markov Models (HMMs) and Profile Hidden Markov Models (PHMMs), both trained on sequences of API calls. We contrast our results…

Cryptography and Security · Computer Science 2019-01-23 Swapna Vemparala , Fabio Di Troia , Corrado A. Visaggio , Thomas H. Austin , Mark Stamp

We investigate gamma-ray emission in the impulsive phase of solar flares and the detectability of non-thermal signatures from protostellar flares. Energetic solar flares emit high-energy gamma rays of GeV energies, but their production…

High Energy Astrophysical Phenomena · Physics 2023-03-08 Shigeo S. Kimura , Shinsuke Takasao , Kengo Tomida

The hidden Markov model (HMM) is a widely-used generative model that copes with sequential data, assuming that each observation is conditioned on the state of a hidden Markov chain. In this paper, we derive a novel algorithm to cluster HMMs…

Machine Learning · Computer Science 2012-10-26 Emanuele Coviello , Antoni B. Chan , Gert R. G. Lanckriet

Data sets comprised of sequences of curves sampled at high frequencies in time are increasingly common in practice, but they can exhibit complicated dependence structures that cannot be modelled using common methods of Functional Data…

Starspots and stellar flares are indicators of stellar magnetic activity.The magnetic energy stored around spots is thought to be the origin of flares, but the connection is not completely understood. To investigate the relation between…

Solar and Stellar Astrophysics · Physics 2023-05-17 Kai Ikuta , Kosuke Namekata , Yuta Notsu , Hiroyuki Maehara , Soshi Okamoto , Satoshi Honda , Daisaku Nogami , Kazunari Shibata

The detection of change-points in heterogeneous sequences is a statistical challenge with many applications in fields such as finance, signal analysis and biology. A wide variety of literature exists for finding an ideal set of…

Applications · Statistics 2012-12-11 The Minh Luong , Vittorio Perduca , Gregory Nuel

Hidden semi-Markov Models (HSMM's) - while broadly in use - are restricted to a discrete and uniform time grid. They are thus not well suited to explain often irregularly spaced discrete event data from continuous-time phenomena. We show…

Machine Learning · Statistics 2022-10-18 Nicolai Engelmann , Heinz Koeppl

This paper presents a novel methodology for modelling precipitation patterns in a specific geographical region using Hidden Markov Models (HMMs). Departing from conventional HMMs, where the hidden state process is assumed to be Markovian,…

Methodology · Statistics 2025-08-05 M. L. Gamiz , D. Montoro , M. C Segovia-Garcia

Stellar flares are energetic events occurring in stellar atmospheres. They have been observed on various stars using photometric light curves and spectra. On some cool stars, flares tend to release substantially more energy compared to…

Solar and Stellar Astrophysics · Physics 2023-01-25 Jiří Wollmann , Petr Heinzel , Petr Kabáth

With the advent of digital astronomy, new benefits and new challenges have been presented to the modern day astronomer. No longer can the astronomer rely on manual processing, instead the profession as a whole has begun to adopt more…

Instrumentation and Methods for Astrophysics · Physics 2016-06-16 Kyle B. Johnston , Adrian M. Peter

Hidden Markov Models (HMMs) are one of the most fundamental and widely used statistical tools for modeling discrete time series. In general, learning HMMs from data is computationally hard (under cryptographic assumptions), and…

Machine Learning · Computer Science 2012-07-10 Daniel Hsu , Sham M. Kakade , Tong Zhang

Stellar flares are powerful bursts of electromagnetic radiation triggered by magnetic reconnection in the chromosphere of stars, occurring frequently and intensely on active M dwarfs. While missions like TESS and Kepler have studied regular…

Solar and Stellar Astrophysics · Physics 2025-07-16 J. Poyatos , O. Fors , J. M. Gómez Cama , I. Ribas

We explore methods for the identification of stellar flare events in irregularly sampled data of ground-based time domain surveys. In particular, we describe a new technique for identifying flaring stars, which we have implemented in a…

Solar and Stellar Astrophysics · Physics 2019-09-04 Kellen D. Lawson , John P. Wisniewski , Eric C. Bellm , Adam F. Kowalski , David L. Shupe