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Recent advances in molecular representation learning have produced highly effective encodings of molecules for numerous cheminformatics and bioinformatics tasks. However, extracting general chemical insight while balancing predictive…

Machine Learning · Computer Science 2025-09-26 Rahul Khorana

We present an extended analysis, based on the dynamics towards synchronization of a system of coupled oscillators, of the hierarchy of communities in complex networks. In the synchronization process, different structures corresponding to…

Adaptation and Self-Organizing Systems · Physics 2009-11-11 Alex Arenas , Albert Diaz-Guilera , Conrad J. Perez-Vicente

Collective behavior in large ensembles of dynamical units with non-pairwise interactions may play an important role in several systems ranging from brain function to social networks. Despite recent work pointing to simplicial structure,…

Adaptation and Self-Organizing Systems · Physics 2019-06-26 Per Sebastian Skardal , Alex Arenas

This manuscript presents an approach for simultaneously optimizing the connectivity and elevation of grid-shell structures acting in pure compression (or pure tension) under the combined effects of a prescribed external loading and the…

Computational Engineering, Finance, and Science · Computer Science 2025-05-14 Helen E. Fairclough , Karol Bolbotowski , Linwei He , Andrew Liew , Matthew Gilbert

Recent studies of dynamic properties in complex systems point out the profound impact of hidden geometry features known as simplicial complexes, which enable geometrically conditioned many-body interactions. Studies of collective behaviours…

Statistical Mechanics · Physics 2021-09-15 Malayaja Chutani , Bosiljka Tadic , Neelima Gupte

Graph clustering aims to partition nodes into distinct clusters based on their similarity, thereby revealing relationships among nodes. Nevertheless, most existing methods do not fully utilize these edge weights. Leveraging edge weights in…

Machine Learning · Computer Science 2026-02-03 Haobing Liu , Yinuo Zhang , Tingting Wang , Ruobing Jiang , Yanwei Yu

Systems as diverse as genetic networks or the world wide web are best described as networks with complex topology. A common property of many large networks is that the vertex connectivities follow a scale-free power-law distribution. This…

Disordered Systems and Neural Networks · Physics 2015-06-25 Albert-Laszlo Barabasi , Reka Albert

The emergence of dynamical abrupt transitions in the macroscopic state of a system is currently a subject of the utmost interest. Given a set of phase oscillators networking with a generic wiring of connections and displaying a generic…

Adaptation and Self-Organizing Systems · Physics 2014-02-14 I. Leyva , I. Sendiña-Nadal , J. A. Almendral , A. Navas , S. Olmi , S. Boccaletti

Generalized synchronization is plausibly the most complex form of synchronization. Previous studies have revealed the existence of weak or strong forms of generalized synchronization depending on the multi- or mono-valued nature of the…

Chaotic Dynamics · Physics 2024-01-23 Christophe Letellier , Ludovico Minati , Irene Sendina-Nadal , I. Leyva

Concepts such as energy dependence, random deployment, dynamic topological update, self-organization, varying large number of nodes are among many factors that make WSNs a type of complex system. However, when analyzing WSNs properties…

Networking and Internet Architecture · Computer Science 2012-08-16 Vincent Labatut , Ozgovde Atay

This paper introduces a model that identifies spatial relationships for a structural analysis based on the concept of simplicial complex. The spatial relationships are identified through overlapping two map layers, namely a primary layer…

Data Analysis, Statistics and Probability · Physics 2008-01-15 Bin Jiang , Itzhak Omer

Understanding how the interplay between higher-order and multilayer structures of interconnections influences the synchronization behaviors of dynamical systems is a feasible problem of interest, with possible application in essential…

Chaotic Dynamics · Physics 2022-09-05 Md Sayeed Anwar , Dibakar Ghosh

Complexity of dynamical networks can arise not only from the complexity of the topological structure but also from the time evolution of the topology. In this paper, we study the synchronous motion of coupled maps in time-varying complex…

Chaotic Dynamics · Physics 2008-12-16 Wenlian Lu , Fatihcan M. Atay , Jürgen Jost

We report on a hitherto unnoticed type of resonances occurring in scattering from networks (quantum graphs) which are due to the complex connectivity of the graph - its topology. We consider generic open graphs and show that any cycle leads…

Chaotic Dynamics · Physics 2015-06-12 Sven Gnutzmann , Holger Schanz , Uzy Smilansky

This paper studies reduced-order modeling of dynamic networks with strongly connected topology. Given a graph clustering of an original complex network, we construct a quotient graph with less number of vertices, where the edge weights are…

Optimization and Control · Mathematics 2020-03-10 Xiaodong Cheng , Lanlin Yu , Dingchao Ren , Jacquelien M. A. Scherpen

In recent years, there has been a growing recognition that higher-order structures are important features in real-world networks. A particular class of structures that has gained prominence is known as a simplicial complex. Despite their…

Social and Information Networks · Computer Science 2022-04-12 Mayank Kejriwal , Ke Shen

Coupling frequently enhances noise-induced coherence and synchronization in interacting nonlinear systems, but it does so separately. In principle collective stochastic coherence and synchronizability are incompatible phenomena, since…

Adaptation and Self-Organizing Systems · Physics 2015-06-17 Pablo Balenzuela , Pau Rué , Stefano Boccaletti , Jordi García-Ojalvo

Hypergraph structure learning, which aims to learn the hypergraph structures from the observed signals to capture the intrinsic high-order relationships among the entities, becomes crucial when a hypergraph topology is not readily available…

Machine Learning · Computer Science 2025-03-12 Bohan Tang , Siheng Chen , Xiaowen Dong

Consensus strategies find a variety of applications in distributed coordination and decision making in multi-agent systems. In particular, average consensus plays a key role in a number of applications and is closely associated with two…

Multiagent Systems · Computer Science 2012-10-17 Themistoklis Charalambous , Christoforos N. Hadjicostis

Network Science provides a universal formalism for modelling and studying complex systems based on pairwise interactions between agents. However, many real networks in the social, biological or computer sciences involve interactions among…

Social and Information Networks · Computer Science 2020-06-24 Daniel Hernández Serrano , Juan Hernández Serrano , Darío Sánchez Gómez