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The far-reaching consequences of ecological interactions in the dynamics of biological communities remain an intriguing subject. For decades, competition has been a cornerstone in ecological processes, but mounting evidence shows that…

Populations and Evolution · Quantitative Biology 2021-07-19 F. Meloni , G. Nakamura , B. Grammaticos , A. S. Martinez , M. Badoual

In this note, we study the long time behavior of Lotka-Volterra systems whose coefficients vary randomly. Bena{\"i}m and Lobry (2015) recently established that randomly switching between two environments that are both favorable to the same…

Probability · Mathematics 2017-06-15 Florent Malrieu , Pierre-André Zitt

Evolution occurs in populations of reproducing individuals. The structure of a biological population affects which traits evolve. Understanding evolutionary game dynamics in structured populations is difficult. Precise results have been…

Populations and Evolution · Quantitative Biology 2017-08-16 Benjamin Allen , Gabor Lippner , Yu-Ting Chen , Babak Fotouhi , Naghmeh Momeni , Martin A. Nowak , Shing-Tung Yau

A detailed analysis of three species-rich ecosystem food webs has shown that they display scale-free distributions of connections. Such graphs of interaction are in fact shared by a number of biological and technological networks, which…

Disordered Systems and Neural Networks · Physics 2007-05-23 Ricard V. Sole Jose M. Montoya

The behavior of ecological systems mainly relies on the interactions between the species it involves. We consider the problem of inferring the species interaction network from abundance data. To be relevant, any network inference…

Applications · Statistics 2019-10-29 Raphaëlle Momal , Stéphane Robin , Christophe Ambroise

Understanding the stability of complex communities is a central focus in ecology, many important theoretical advancements have been made to identify drivers of ecological stability. However, previous results often rely on the…

Populations and Evolution · Quantitative Biology 2025-04-04 Shuaiying Wang , Yuguang Yang , Aming Li

A classic measure of ecological stability describes the tendency of a community to return to equilibrium after small perturbation. While many advances show how the network structure of these communities severely constrains such tendencies,…

Populations and Evolution · Quantitative Biology 2015-06-09 Gang Yan , Neo D. Martinez , Yang-Yu Liu

The robustness of an ecological network quantifies the resilience of the ecosystem it represents to species loss. It corresponds to the proportion of species that are disconnected from the rest of the network when extinctions occur…

Populations and Evolution · Quantitative Biology 2021-11-25 Saint-Clair Chabert-Liddell , Pierre Barbillon , Sophie Donnet

Ecosystems represent archetypal complex dynamical systems, often modelled by coupled differential equations of the form $$ \frac{d x_i}{d t} = x_i \varphi_i(x_1,\cdots, x_N)\ , $$ where $N$ represents the number of species and $x_i$, the…

Populations and Evolution · Quantitative Biology 2022-12-13 Imane Akjouj , Matthieu Barbier , Maxime Clenet , Walid Hachem , Mylène Maïda , François Massol , Jamal Najim , Viet Chi Tran

Complex system stability can be studied via linear stability analysis using Random Matrix Theory (RMT) or via feasibility (requiring positive equilibrium abundances). Both approaches highlight the importance of interaction structure. Here…

Populations and Evolution · Quantitative Biology 2023-05-17 Xiaoyuan Liu , George W. A. Constable , Jonathan W. Pitchford

Evolutionary graph theory is a well established framework for modelling the evolution of social behaviours in structured populations. An emerging consensus in this field is that graphs that exhibit heterogeneity in the number of connections…

Populations and Evolution · Quantitative Biology 2018-11-20 Wes Maciejewski , Feng Fu , Christoph Hauert

Although species longevity is subject to a diverse range of selective forces, the mortality curves of a wide variety of organisms are rather similar. We argue that aging and its universal characteristics may have evolved by means of a…

Populations and Evolution · Quantitative Biology 2013-02-01 Dervis Can Vural , Greg Morrison , L. Mahadevan

Metacommunity theory is considered a promising approach for explaining species diversity and food web complexity. Recently Pillai et al. proposed a simple modeling framework for the dynamics of food webs at the metacommunity level. Here, we…

Populations and Evolution · Quantitative Biology 2012-12-21 Gesa A. Böhme , Thilo Gross

How cooperation emerges in human societies is both an evolutionary enigma, and a practical problem with tangible implications for societal health. Population structure has long been recognized as a catalyst for cooperation because local…

Populations and Evolution · Quantitative Biology 2022-01-06 Qi Su , Joshua. B Plotkin

We analyze the nonlinear relaxation of a complex ecosystem composed of many interacting species. The ecological system is described by generalized Lotka-Volterra equations with a multiplicative noise. The transient dynamics is studied in…

Statistical Mechanics · Physics 2016-11-23 M. A. Cirone , F. de Pasquale , B. Spagnolo

This paper is devoted to the analysis of a simple Lotka-Volterra food chain evolving in a stochastic environment. It can be seen as the companion paper of Hening and Nguyen (J. of Math. Biol. `18) where we have characterized the persistence…

Probability · Mathematics 2019-04-02 Alexandru Hening , Dang H. Nguyen

One of the key challenges in synthetic biology is devising robust signaling primitives for engineered microbial consortia. In such systems, a fundamental signal amplification problem is the majority consensus problem: given a system with…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-05-07 Matthias Függer , Thomas Nowak , Joel Rybicki

Mutualistic networks have attracted increasing attention in the ecological literature in the last decades as they play a key role in the maintenance of biodiversity. Here, we develop an analytical framework to study the structural stability…

Physics and Society · Physics 2021-02-05 Xiangrong Wang , Thomas Peron , Johan L. A. Dubbeldam , Sonia Kèfi , Yamir Moreno

The evolution of cooperation often depends upon population structure, yet nearly all models of cooperation implicitly assume that this structure remains static. This is a simplifying assumption, because most organisms possess genetic traits…

Populations and Evolution · Quantitative Biology 2012-08-03 Simon T. Powers , Alexandra S. Penn , Richard A. Watson

Spatial structure is one of the simplest and most studied ecological factors that affect the evolution of cooperation. It has been shown that spatial reciprocity promotes cooperation due to the formation of cooperative clusters, which…

Populations and Evolution · Quantitative Biology 2020-06-24 Elton Júnior. S , Marco A. Amaral , Lucas Wardil
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