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Reasoning in language models is difficult to evaluate: natural-language traces are unverifiable, symbolic datasets are too small, and most benchmarks conflate heuristics with inference. We present FOL-Traces, the first large-scale dataset…

Artificial Intelligence · Computer Science 2026-01-27 Isabelle Lee , Sarah Liaw , Dani Yogatama

Understanding how Transformer-based language models store and retrieve factual associations is critical for improving interpretability and enabling targeted model editing. Prior work, primarily on GPT-style models, has identified MLP…

Computation and Language · Computer Science 2025-09-11 Minyeong Choe , Haehyun Cho , Changho Seo , Hyunil Kim

Posttranslational modifications (PTMs) are an integral component to how cells respond to perturbation. While experimental advances have enabled improved PTM identification capabilities, the same throughput for characterizing how structural…

Biomolecules · Quantitative Biology 2022-11-23 Austin T. Weigle , Jiangyan Feng , Diwakar Shukla

Programmers often use an iterative process of hypothesis generation ("perhaps this function is called twice?") and hypothesis testing ("let's count how many times this breakpoint fires") to understand the behavior of unfamiliar or…

Programming Languages · Computer Science 2026-04-14 Shardul Chiplunkar , Clément Pit-Claudel

Identifying and quantifying memory are often critical steps in developing a mechanistic understanding of stochastic processes. These are particularly challenging and necessary when exploring processes that exhibit long-range correlations.…

Statistical Mechanics · Physics 2016-04-20 Sarah E. Marzen , James P. Crutchfield

Transformers have achieved great success across a wide range of applications, yet the theoretical foundations underlying their success remain largely unexplored. To demystify the strong capacities of transformers applied to versatile…

Machine Learning · Computer Science 2026-03-25 Chenyang Zhang , Qingyue Zhao , Quanquan Gu , Yuan Cao

Transformers have increasingly outperformed gated RNNs in obtaining new state-of-the-art results on supervised tasks involving text sequences. Inspired by this trend, we study the question of how Transformer-based models can improve the…

Machine Learning · Computer Science 2020-08-19 Ricky Loynd , Roland Fernandez , Asli Celikyilmaz , Adith Swaminathan , Matthew Hausknecht

We present a technique for efficient stateless model checking of programs that execute under the relaxed memory models TSO and PSO. The basis for our technique is a novel representation of executions under TSO and PSO, called chronological…

Logic in Computer Science · Computer Science 2015-01-12 Parosh Abdulla , Stavros Aronis , Mohammed Faouzi Atig , Bengt Jonsson , Carl Leonardsson , Konstantinos Sagonas

AI-powered planning tools show promise in supporting programming learners by enabling early, formative feedback on their thinking processes prior to coding. To date, however, most AI-supported planning tools rely on students'…

Human-Computer Interaction · Computer Science 2026-02-04 Yoshee Jain , Heejin Do , Zihan Wu , April Yi Wang

Humans are adept at uncovering abstract associations in the world around them, yet the underlying mechanisms remain poorly understood. Intuitively, learning the higher-order structure of statistical relationships should involve complex…

Neurons and Cognition · Quantitative Biology 2020-03-26 Christopher W. Lynn , Ari E. Kahn , Nathaniel Nyema , Danielle S. Bassett

A large fraction of data generated via human activities such as online purchases, health records, spatial mobility etc. can be represented as a sequence of events over a continuous-time. Learning deep learning models over these…

Machine Learning · Computer Science 2022-08-29 Vinayak Gupta , Srikanta Bedathur , Sourangshu Bhattacharya , Abir De

Animals execute goal-directed behaviours despite the limited range and scope of their sensors. To cope, they explore environments and store memories maintaining estimates of important information that is not presently available. Recently,…

While Hopfield networks are known as paradigmatic models for memory storage and retrieval, modern artificial intelligence systems mainly stand on the machine learning paradigm. We show that it is possible to formulate a teacher-student…

Disordered Systems and Neural Networks · Physics 2024-01-02 Francesco Alemanno , Luca Camanzi , Gianluca Manzan , Daniele Tantari

Language models are pretrained as passive predictors with no incentive to model the consequences of their own outputs. Post-training changes this: a model producing its own responses can benefit from recognizing that it is on-policy. We…

Machine Learning · Computer Science 2026-05-26 Asvin G. , Jack Lindsey

Large-scale Transformer language models (LMs) trained solely on next-token prediction with web-scale data can solve a wide range of tasks after seeing just a few examples. The mechanism behind this capability, known as in-context learning…

Computation and Language · Computer Science 2025-10-08 Jingcheng Niu , Subhabrata Dutta , Ahmed Elshabrawy , Harish Tayyar Madabushi , Iryna Gurevych

Spatiotemporal point processes (STPPs) are probabilistic models for events occurring in continuous space and time. Real-world event data often exhibit intricate dependencies and heterogeneous dynamics. By incorporating modern deep learning…

Machine Learning · Computer Science 2025-02-14 Sumantrak Mukherjee , Mouad Elhamdi , George Mohler , David A. Selby , Yao Xie , Sebastian Vollmer , Gerrit Grossmann

Transformers have the capacity to act as supervised learning algorithms: by properly encoding a set of labeled training ("in-context") examples and an unlabeled test example into an input sequence of vectors of the same dimension, the…

Machine Learning · Computer Science 2024-12-16 Spencer Frei , Gal Vardi

Temporal point processes (TPPs) are stochastic process models used to characterize event sequences occurring in continuous time. Traditional statistical TPPs have a long-standing history, with numerous models proposed and successfully…

Machine Learning · Computer Science 2025-06-30 Feng Zhou , Quyu Kong , Jie Qiao , Cheng Wan , Yixuan Zhang , Ruichu Cai

Memory-based self-evolution has emerged as a promising paradigm for coding agents. However, existing approaches typically restrict memory utilization to homogeneous task domains, failing to leverage the shared infrastructural foundations,…

Artificial Intelligence · Computer Science 2026-04-16 Kangsan Kim , Minki Kang , Taeil Kim , Yanlai Yang , Mengye Ren , Sung Ju Hwang

Do transformers, when trained on sequential reasoning traces, build internal models of the underlying task? And if so, does the structure of those internal representations mirror the structure of the domain? We train an 8-layer transformer…

Machine Learning · Computer Science 2026-05-20 Roman Kniazev , Nathanaël Fijalkow