English
Related papers

Related papers: Phylogeny-Informed Interaction Estimation Accelera…

200 papers

The inherent complexity of human beings manifests in a remarkable diversity of responses to intricate environments, enabling us to approach problems from varied perspectives. However, in the study of cooperation, existing research within…

Populations and Evolution · Quantitative Biology 2026-02-04 Guozhong Zheng , Zhenwei Ding , Jiqiang Zhang , Shengfeng Deng , Weiran Cai , Li Chen

Biological phenotypes are products of complex evolutionary processes in which selective forces influence multiple biological trait measurements in unknown ways. Phylogenetic factor analysis disentangles these relationships across the…

Evolutionary relationships between species are usually inferred through phylogenetic analysis, which provides phylogenetic trees computed from allelic profiles built by sequencing specific regions of the sequences and abstracting them to…

Data Structures and Algorithms · Computer Science 2021-01-01 Luana Silva

Natural selection is general and powerful concept not only to explain evolutionary processes of biological organisms but also to design engineering systems such as genetic algorithms and particle filters. There is a surge of interest, both…

Populations and Evolution · Quantitative Biology 2021-06-09 So Nakashima , Tetsuya J. Kobayashi

Evolution gave rise to human and animal intelligence here on Earth. We argue that the path to developing artificial human-like-intelligence will pass through mimicking the evolutionary process in a nature-like simulation. In Nature, there…

Artificial Intelligence · Computer Science 2020-05-07 João P. Abrantes , Arnaldo J. Abrantes , Frans A. Oliehoek

We study the coevolutionary dynamics of the diversity of phenotype expression and the evolution of cooperation in the Prisoner's Dilemma game. Rather than pre-assigning zero-or-one interaction rate, we diversify the rate of interaction by…

Populations and Evolution · Quantitative Biology 2018-06-05 Te Wu , Feng Fu , Long Wang

Automated co-located human-human interaction analysis has been addressed by the use of nonverbal communication as measurable evidence of social and psychological phenomena. We survey the computing studies (since 2010) detecting phenomena…

Human-Computer Interaction · Computer Science 2023-10-05 Cigdem Beyan , Alessandro Vinciarelli , Alessio Del Bue

In this paper we present a novel tool to evaluate problem solving systems. Instead of using a system to solve a problem, we suggest using the problem to evaluate the system. By finding a numerical representation of a problem's complexity,…

Neural and Evolutionary Computing · Computer Science 2007-05-23 Goren Gordon , Uri Einziger-Lowicz

With this paper, we contribute to the growing research area of feature-based analysis of bio-inspired computing. In this research area, problem instances are classified according to different features of the underlying problem in terms of…

Neural and Evolutionary Computing · Computer Science 2016-02-10 Shayan Poursoltan , Frank Neumann

We introduce a novel co-design method for autonomous moving agents' shape attributes and locomotion by combining deep reinforcement learning and evolution with user control. Our main inspiration comes from evolution, which has led to wide…

Artificial Intelligence · Computer Science 2022-05-24 Zhiquan Wang , Bedrich Benes , Ahmed H. Qureshi , Christos Mousas

In addition to their undisputed success in solving classical optimization problems, neuroevolutionary and population-based algorithms have become an alternative to standard reinforcement learning methods. However, evolutionary methods often…

Neural and Evolutionary Computing · Computer Science 2021-05-18 Jörg Stork , Martin Zaefferer , Nils Eisler , Patrick Tichelmann , Thomas Bartz-Beielstein , A. E. Eiben

Since the advent of modern bioinformatics, the challenging, multifaceted problem of reconstructing phylogenetic history from biological sequences has hatched perennial statistical and algorithmic innovation. Studies of the phylogenetic…

Data Structures and Algorithms · Computer Science 2024-03-05 Matthew Andres Moreno , Santiago Rodriguez Papa , Emily Dolson

Understanding which phenotypic traits are consistently correlated throughout evolution is a highly pertinent problem in modern evolutionary biology. Here, we propose a multivariate phylogenetic latent liability model for assessing the…

Populations and Evolution · Quantitative Biology 2015-09-17 Gabriela B. Cybis , Janet S. Sinsheimer , Trevor Bedford , Alison E. Mather , Philippe Lemey , Marc A. Suchard

Neuroevolutionary algorithms, automatic searches of neural network structures by means of evolutionary techniques, are computationally costly procedures. In spite of this, due to the great performance provided by the architectures which are…

Neural and Evolutionary Computing · Computer Science 2021-05-28 Unai Garciarena , Nuno Lourenço , Penousal Machado , Roberto Santana , Alexander Mendiburu

Co-evolutionary algorithms have a wide range of applications, such as in hardware design, evolution of strategies for board games, and patching software bugs. However, these algorithms are poorly understood and applications are often…

Neural and Evolutionary Computing · Computer Science 2025-09-25 Per Kristian Lehre

Evolution is a process that is influenced by various environmental factors, e.g. the interactions between different species, genes, and biogeographical properties. Hence, it is interesting to study the combined evolutionary history of…

Quantitative Methods · Quantitative Biology 2013-08-02 Nicolas Wieseke , Matthias Bernt , Martin Middendorf

Energy landscapes play a crucial role in shaping dynamics of many real-world complex systems. System evolution is often modeled as particles moving on a landscape under the combined effect of energy-driven drift and noise-induced diffusion,…

Computational Engineering, Finance, and Science · Computer Science 2025-03-04 Ruikun Li , Huandong Wang , Qingmin Liao , Yong Li

Considerable research has been devoted to deep learning-based predictive models for system prognostics and health management in the reliability and safety community. However, there is limited study on the utilization of deep learning for…

Machine Learning · Statistics 2021-09-07 Taotao Zhou , Enrique Lopez Droguett , Ali Mosleh

Analyzing interaction data provides an opportunity to learn about users, uncover their underlying goals, and create intelligent visualization systems. The first step for intelligent response in visualizations is to enable computers to infer…

Human-Computer Interaction · Computer Science 2020-10-19 Shayan Monadjemi , Roman Garnett , Alvitta Ottley

Human society and natural environment form a complex giant ecosystem, where human activities not only lead to the change of environmental states, but also react to them. By using collective-risk social dilemma game, some studies have…

Physics and Society · Physics 2024-04-24 Linjie Liu , Xiaojie Chen , Attila Szolnoki