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Biological and biomedical imaging datasets record the constitution, architecture and dynamics of living organisms across several orders of magnitude of space and time. Imaging technologies are now used throughout the life and biomedical…
Recent advancements have explored text-to-image diffusion models for synthesizing out-of-distribution (OOD) samples, substantially enhancing the performance of OOD detection. However, existing approaches typically rely on perturbing…
Modern digital ecosystems, spanning software, hardware, learning models, datasets, and cryptographic products, continue to grow in complexity, making it difficult for organizations to understand and manage component dependencies. Bills of…
Despite the ecological significance of invertebrates, global trait databases remain heavily biased toward vertebrates and plants, limiting comprehensive ecological analyses of high-diversity groups like ground beetles. Ground beetles…
This study proposes a new approach that investigates differences in topological characteristics of visual networks, which are constructed using fMRI BOLD time-series corresponding to visual datasets of COCO, ImageNet, and SUN. A publicly…
As digital data become increasingly available for research, there is a growing awareness of the value of domain agnostic Persistent Identifiers (PIDs) for data. A PID is a globally unique reference to a digital object, which in our case is…
Lifemapper (http://www.lifemapper.org) is a predictive electronic atlas of the Earth's biological biodiversity. Using a screensaver version of the GARP genetic algorithm for modeling species distributions, Lifemapper harnesses vast…
To build safe and reliable graph machine learning systems, unsupervised graph-level anomaly detection (GLAD) and unsupervised graph-level out-of-distribution (OOD) detection (GLOD) have received significant attention in recent years. Though…
Biomedical data is inherently multimodal, consisting of electronic health records, medical imaging, digital pathology, genome sequencing, wearable sensors, and more. The application of artificial intelligence tools to these multifaceted…
Multimodal Foundation Models (FMs) offer a path to learn general-purpose representations from heterogeneous ecological data, easily transferable to downstream tasks. However, practical biodiversity modelling remains fragmented; separate…
Ortholog detection (OD) is a critical step for comparative genomic analysis of protein-coding sequences. In this paper, we begin with a comprehensive comparison of four popular, methodologically diverse OD methods: MultiParanoid, Blat,…
In this paper, we provide a comprehensive study on a new task called collaborative camouflaged object detection (CoCOD), which aims to simultaneously detect camouflaged objects with the same properties from a group of relevant images. To…
Increasing interest in the acquisition of biotic and abiotic resources from within the deep sea (e.g. fisheries, oil-gas extraction, and mining) urgently imposes the development of novel monitoring technologies, beyond the traditional…
Automated identification of plants has improved considerably thanks to the recent progress in deep learning and the availability of training data with more and more photos in the field. However, this profusion of data only concerns a few…
Extensive research shows that more species-rich assemblages are generally more productive and efficient in resource use than comparable assemblages with fewer species. But the question of how diversity simultaneously affects the wide…
Genomic data and biomedical imaging data are undergoing exponential growth. However, our understanding of the phenotype-genotype connection linking the two types of data is lagging behind. While there are many types of software that enable…
We present a demonstration of a web-based system called M2LADS ("System for Generating Multimodal Learning Analytics Dashboards"), designed to integrate, synchronize, visualize, and analyze multimodal data recorded during computer-based…
This paper introduces the Maritime Ship Navigation Behavior Dataset (MID), designed to address challenges in ship detection within complex maritime environments using Oriented Bounding Boxes (OBB). MID contains 5,673 images with 135,884…
Life over the past four billion years has been shaped by proteins and their capacity to assemble into three dimensional conformations. Protein sequence alignments have been the enabling technology for exploring the evolution and functional…
In this article, we present a Web-based System called M2LADS, which supports the integration and visualization of multimodal data recorded in learning sessions in a MOOC in the form of Web-based Dashboards. Based on the edBB platform, the…