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Related papers: A Bird-Eye view on DNA Storage Simulators

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We propose a new abstraction set (SynopSet) that has a continuum of visual representations for the explanatory analysis of molecular dynamics simulations (MDS) in the DNA nanotechnology domain. By re-purposing the commonly used progress bar…

Quantitative Methods · Quantitative Biology 2022-05-04 Deng Luo , Alexandre Kouyoumdjian , Ondřej Strnad , Haichao Miao , Ivan Barišić , Ivan Viola

The emergence of sixth-generation (6G) networks has spurred the development of novel testbeds, including sub-THz networks, cell-free systems, and 6G simulators. To maximize the benefits of these systems, it is crucial to make the generated…

The exponentially increasing demand for data storage has been facing more and more challenges during the past years. The energy costs that it represents are also increasing, and the availability of the storage hardware is not able to follow…

Image and Video Processing · Electrical Eng. & Systems 2022-03-21 Xavier Pic , Marc Antonini

A major obstacle to the development of effective monocular depth estimation algorithms is the difficulty in obtaining high-quality depth data that corresponds to collected RGB images. Collecting this data is time-consuming and costly, and…

Computer Vision and Pattern Recognition · Computer Science 2024-05-03 Seungyeop Lee , Knut Peterson , Solmaz Arezoomandan , Bill Cai , Peihan Li , Lifeng Zhou , David Han

Today's storage systems expose abstractions which are either too low-level (e.g., key-value store, raw-block store) that they require developers to re-invent the wheels, or too high-level (e.g., relational databases, Git) that they lack…

Simulated high-dimensional data is useful for testing, validating, and improving algorithms used in dimension reduction, supervised and unsupervised learning. High-dimensional data is characterized by multiple variables that are dependent…

Molecular data systems have the potential to store information at dramatically higher density than existing electronic media. Some of the first experimental demonstrations of this idea have used DNA, but nature also uses a wide diversity of…

The fall of prices of the high-throughput genome sequencing changes the landscape of modern genomics. A number of large scale projects aimed at sequencing many human genomes are in progress. Genome sequencing also becomes an important aid…

Data Structures and Algorithms · Computer Science 2017-03-03 Sebastian Deorowicz , Agnieszka Danek , Marcin Niemiec

In safety-critical systems (e.g., autonomous vehicles and robots), Deep Neural Networks (DNNs) are becoming a key component for computer vision tasks, particularly semantic segmentation. Further, since the DNN behavior cannot be assessed…

Software Engineering · Computer Science 2025-03-21 Mohammed Oualid Attaoui , Fabrizio Pastore , Lionel Briand

DNA based storage systems received attention by many researchers. This includes archival and re-writable random access DNA based storage systems. In this work, we have developed an efficient technique to encode the data into DNA sequence by…

Information Theory · Computer Science 2016-04-25 Dixita Limbachiya , Vijay Dhameliya , Madhav Khakhar , Manish K Gupta

This paper proposed a new method to build the large scale DNA sequences search system based on web search engine technology. We give a very brief introduction for the methods used in search engine first. Then how to build a DNA search…

Genomics · Quantitative Biology 2011-10-11 Wang Liang , Fang Bo

Scientific software is essential to scientific innovation and in many ways it is distinct from other types of software. Abandoned (or unmaintained), buggy, and hard to use software, a perception often associated with scientific software can…

Software Engineering · Computer Science 2025-06-23 Addi Malviya Thakur , Reed Milewicz , Mahmoud Jahanshahi , Lavínia Paganini , Bogdan Vasilescu , Audris Mockus

How can an author store digital information so that it will be reliably useful, even years later when he is no longer available to answer questions? Methods that might work are not good enough; what is preserved today should be reliably…

Digital Libraries · Computer Science 2007-05-23 H. M. Gladney , R. A. Lorie

Computer simulations are indispensable for analyzing complex systems, yet high-fidelity models often incur prohibitive computational costs. Multi-fidelity frameworks address this challenge by combining inexpensive low-fidelity simulations…

Methodology · Statistics 2025-10-28 Junoh Heo , Romain Boutelet , Chih-Li Sung

Privacy Security of data in Cloud Storage is one of the main issues. Many Frameworks and Technologies are used to preserve data security in cloud storage. [1] Proposes a framework which includes the design of data organization structure,…

Cryptography and Security · Computer Science 2012-05-15 Rajeev Bedi , Mohit Marwaha , Tajinder Singh , Harwinder Singh , Amritpal Singh

In the digital age, the amount of data produced is growing exponentially. Governments and institutions can no longer rely on old methods for storing data and passing on the knowledge to future generations. Digital data preservation is a…

Digital Libraries · Computer Science 2017-07-21 Carlos André Rosa , Olga Craveiro , Patricio Domingues

With the boom in modern software development, open-source software has become an integral part of various industries, driving progress in computer science. However, the immense complexity and diversity of the open-source ecosystem also pose…

Software Engineering · Computer Science 2023-11-17 Yueming Wu , Chengwei Liu , Yang Liu

Software has long been established as an essential aspect of the scientific process in mathematics and other disciplines. However, reliably referencing software in scientific publications is still challenging for various reasons. A crucial…

Digital Libraries · Computer Science 2017-02-07 Helge Holzmann , Wolfram Sperber , Mila Runnwerth

Typical large-scale recommender systems use deep learning models that are stored on a large amount of DRAM. These models often rely on embeddings, which consume most of the required memory. We present Bandana, a storage system that reduces…

Machine Learning · Computer Science 2018-11-16 Assaf Eisenman , Maxim Naumov , Darryl Gardner , Misha Smelyanskiy , Sergey Pupyrev , Kim Hazelwood , Asaf Cidon , Sachin Katti

We consider the problem of assembling a sequence based on a collection of its substrings observed through a noisy channel. The mathematical basis of the problem is the construction and design of sequences that may be discriminated based on…

Information Theory · Computer Science 2015-11-04 Han Mao Kiah , Gregory J. Puleo , Olgica Milenkovic
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