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The paper algorithmizes the problem of regime change point identification for data measured in a system exhibiting impulsive behaviors. This is a fundamental challenge for annotation of measurement data relevant, e.g., for designing…

Biochemical networks play a crucial role in biological systems, implementing a broad range of vital functions. They normally operate at low copy numbers and in spatial settings, but this is often ignored and well-stirred conditions are…

Molecular Networks · Quantitative Biology 2017-05-25 Thomas R. Sokolowski , Pieter Rein ten Wolde

Quick simulations for iterative evaluations of multi-design variables and boundary conditions are essential to find the optimal acoustic conditions in building design. We propose to use the reduced basis method (RBM) for realistic room…

Computational Engineering, Finance, and Science · Computer Science 2023-02-01 Hermes Sampedro Llopis , Cheol-Ho Jeong , Allan P. Engsig-Karup

We present a method for enhanced sampling of molecular dynamics simulations using stochastic resetting. Various phenomena, ranging from crystal nucleation to protein folding, occur on timescales that are unreachable in standard simulations.…

Chemical Physics · Physics 2023-02-09 Ofir Blumer , Shlomi Reuveni , Barak Hirshberg

Complex systems are fascinating because their rich macroscopic properties emerge from the interaction of many simple parts. Understanding the building principles of these emergent phenomena in nature requires assessing natural complex…

Neurons and Cognition · Quantitative Biology 2022-11-17 Anna Levina , Viola Priesemann , Johannes Zierenberg

Making material experiments more efficient is a high priority for materials scientists who seek to discover new materials with desirable properties. In this paper, we investigate how to optimize the laborious sequential measurements of…

Materials Science · Physics 2019-10-24 Takuya Kanazawa , Akinori Asahara , Hidekazu Morita

We propose a new embedding method which is particularly well-suited for settings where the sample size greatly exceeds the ambient dimension. Our technique consists of partitioning the space into simplices and then embedding the data points…

Machine Learning · Computer Science 2020-02-07 Lee-Ad Gottlieb , Eran Kaufman , Aryeh Kontorovich , Gabriel Nivasch , Ofir Pele

Random matrix theory (RMT) provides a successful model for quantum systems, whose classical counterpart has a chaotic dynamics. It is based on two assumptions: (1) matrix-element independence, and (2) base invariance. Last decade witnessed…

Chaotic Dynamics · Physics 2011-09-27 A. Y. Abul-Magd

We consider the important problem of estimating parameter sensitivities for stochastic models of reaction networks that describe the dynamics as a continuous-time Markov process over a discrete lattice. These sensitivity values are useful…

Probability · Mathematics 2018-01-12 Ankit Gupta , Muruhan Rathinam , Mustafa Khammash

Many applications in machine learning or signal processing involve nonsmooth optimization problems. This nonsmoothness brings a low-dimensional structure to the optimal solutions. In this paper, we propose a randomized proximal gradient…

Optimization and Control · Mathematics 2020-04-29 Dmitry Grishchenko , Franck Iutzeler , Jérôme Malick

In this paper, we introduce Saliency-Based Adaptive Masking (SBAM), a novel and cost-effective approach that significantly enhances the pre-training performance of Masked Image Modeling (MIM) approaches by prioritizing token salience. Our…

Computer Vision and Pattern Recognition · Computer Science 2024-04-15 Hyesong Choi , Hyejin Park , Kwang Moo Yi , Sungmin Cha , Dongbo Min

Adaptive sparse coding methods learn a possibly overcomplete set of basis functions, such that natural image patches can be reconstructed by linearly combining a small subset of these bases. The applicability of these methods to visual…

Computer Vision and Pattern Recognition · Computer Science 2010-10-19 Koray Kavukcuoglu , Marc'Aurelio Ranzato , Yann LeCun

Real-world data is complex and often consists of objects that can be decomposed into multiple entities (e.g. images into pixels, graphs into interconnected nodes). Randomized smoothing is a powerful framework for making models provably…

Machine Learning · Computer Science 2024-11-12 Yan Scholten , Jan Schuchardt , Aleksandar Bojchevski , Stephan Günnemann

Molecular circuits capable of autonomous learning could unlock novel applications in fields such as bioengineering and synthetic biology. To this end, existing chemical implementations of neural computing have mainly relied on emulating…

Machine Learning · Computer Science 2025-09-23 Rajiv Teja Nagipogu , John H. Reif

Randomized smoothing is a recent technique that achieves state-of-art performance in training certifiably robust deep neural networks. While the smoothing family of distributions is often connected to the choice of the norm used for…

Machine Learning · Computer Science 2022-07-06 Motasem Alfarra , Adel Bibi , Philip H. S. Torr , Bernard Ghanem

Randomized smoothing (RS) has successfully been used to improve the robustness of predictions for deep neural networks (DNNs) by adding random noise to create multiple variations of an input, followed by deciding the consensus. To…

Machine Learning · Computer Science 2024-04-29 Emmanouil Seferis , Stefanos Kollias , Chih-Hong Cheng

In comparison to numerous enhanced sampling methods for equilbrium thermodynamics, accelerating simulations for kinetics and nonequilibrium statistics are relatively rare and less effective. Here we derive a time-reversal path sampling…

Chemical Physics · Physics 2023-11-10 Zhirong Liu

Sparse Representation (SR) techniques encode the test samples into a sparse linear combination of all training samples and then classify the test samples into the class with the minimum residual. The classification of SR techniques depends…

Computer Vision and Pattern Recognition · Computer Science 2019-07-01 Chun-Mei Feng , Yong Xu , Zuoyong Li , Jian Yang

Data sampling is an effective method to improve the training speed of neural networks, with recent results demonstrating that it can even break the neural scaling laws. These results critically rely on high-quality scores to estimate the…

Machine Learning · Computer Science 2023-11-23 Shabnam Daghaghi , Benjamin Coleman , Benito Geordie , Anshumali Shrivastava

This work proposes a semantic segmentation network that produces high-quality uncertainty estimates in a single forward pass. We exploit general representations from foundation models and unlabelled datasets through a Masked Image Modeling…

Computer Vision and Pattern Recognition · Computer Science 2024-02-28 David S. W. Williams , Matthew Gadd , Paul Newman , Daniele De Martini