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With a view to connecting random mutation on the molecular level to punctuated equilibrium behavior on the phenotype level, we propose a new model for biological evolution, which incorporates random mutation and natural selection. In this…

Condensed Matter · Physics 2009-10-28 M. Y. Choi , H. Y. Lee , D. Kim , S. H. Park

With a toppling rule which generates metastable sites, we explore the properties of a gradient-driven sandpile that is minimally perturbed at one boundary. In two dimensions we find that the transport of grains takes place along deep…

Statistical Mechanics · Physics 2009-11-07 Lucian Anton , Hendrik B. Geyer

Inspired by observations of sunspots embedded in active regions, it is often assumed that large-scale, strong magnetic flux emerges from the Sun's deep interior in the form of arched, cylindrical structures, colloquially known as flux…

Solar and Stellar Astrophysics · Physics 2022-04-28 Bhishek Manek , Christina Pontin , Nicholas Brummell

We introduce a minimal model of multilevel selection on structured populations, considering the interplay between game theory and population dynamics. Through a bottleneck process, finite groups are formed with cooperators and defectors…

Populations and Evolution · Quantitative Biology 2023-10-02 Jeferson J. Arenzon , Luca Peliti

Search for possible relationships between phylogeny and ontogeny is one of the most important issues in the field of evolutionary developmental biology. By representing developmental dynamics of spatially located cells with gene expression…

Populations and Evolution · Quantitative Biology 2015-04-01 Takahiro Kohsokabe , Kunihiko Kaneko

A self-organization of efficient and robust networks is important for a future design of communication or transportation systems, however both characteristics are incompatible in many real networks. Recently, it has been found that the…

Physics and Society · Physics 2015-08-12 Yukio Hayashi

How condensed-matter simulations depend on the number of molecules being simulated ($N$) is sometimes itself a valuable piece of information. Liquid crystals provide a case in point. Light scattering and $2d$-IR experiments on…

Soft Condensed Matter · Physics 2024-12-20 Eleftherios Mainas , Richard M. Stratt

Coevolution between strategy and network structure is established as a means to arrive at optimal conditions for resolving social dilemmas. Yet recent research highlights that the interdependence between networks may be just as important as…

Physics and Society · Physics 2014-04-11 Zhen Wang , Attila Szolnoki , Matjaz Perc

A big challenge in current biology is to understand the exact self-organization mechanism underlying complex multi-physics coupling developmental processes. With multiscale computations of from subcellular gene expressions to cell…

Cell Behavior · Quantitative Biology 2021-05-18 Xiaoliang Wang , Dongyun Bai

Exploiting data invariances is crucial for efficient learning in both artificial and biological neural circuits. Understanding how neural networks can discover appropriate representations capable of harnessing the underlying symmetries of…

Disordered Systems and Neural Networks · Physics 2022-10-17 Alessandro Ingrosso , Sebastian Goldt

Attractor dynamics are a hallmark of many complex systems, including the brain. Understanding how such self-organizing dynamics emerge from first principles is crucial for advancing our understanding of neuronal computations and the design…

Neurons and Cognition · Quantitative Biology 2026-05-22 Tamas Spisak , Karl Friston

A suspension of swimming microorganisms often generates a large-scale convective pattern known as bioconvection. In contrast to the thermal Rayleigh-Benard system, recent experimental studies report an emergence of steady localized…

Fluid Dynamics · Physics 2024-06-25 Yoshiki Hiruta , Kenta Ishimoto

We consider two variational models for transport networks, an urban planning and a branched transport model, in which the degree of network complexity and ramification is governed by a small parameter $\varepsilon>0$. Smaller $\varepsilon$…

Classical Analysis and ODEs · Mathematics 2017-11-16 Alessio Brancolini , Benedikt Wirth

Several problems in machine learning are naturally expressed as the design and analysis of time-evolving probability distributions. This includes sampling via diffusion methods, optimizing the weights of neural networks, and analyzing the…

Optimization and Control · Mathematics 2026-05-28 Gabriel Peyré

Traditionally, most complex intelligence architectures are extremely non-convex, which could not be well performed by convex optimization. However, this paper decomposes complex structures into three types of nodes: operators, algorithms…

Machine Learning · Computer Science 2018-01-16 Han Xiao

Dry lakes covered with a salt crust organised into beautifully patterned networks of narrow ridges are common in arid regions. Here, we consider the initial instability and the ultimate fate of buoyancy-driven convection that could lead to…

Fluid Dynamics · Physics 2021-05-31 Jana Lasser , Marcel Ernst , Lucas Goehring

Structured prediction tasks pose a fundamental trade-off between the need for model complexity to increase predictive power and the limited computational resources for inference in the exponentially-sized output spaces such models require.…

Machine Learning · Statistics 2012-08-17 David Weiss , Benjamin Sapp , Ben Taskar

Transportation and distribution networks are a class of spatial networks that have been of interest in recent years. These networks are often characterized by the presence of complex structures such as central loops paired with peripheral…

Physics and Society · Physics 2023-01-23 Sebastiano Bontorin , Giulia Cencetti , Riccardo Gallotti , Bruno Lepri , Manlio De Domenico

Physical fundamentals of the self-organizing theory for the system with varying constraints are considered. A variation principle, specifically the principle of dynamic harmonization as a generalization of the Gauss-Hertz principle for the…

General Physics · Physics 2013-07-19 S. Adamenko , V. Bolotov , V. Novikov

As a tool for understanding the meridional circulation of the atmosphere, a two-dimensional ( latitude -- height ) numerical model is used to clarify the relationship between the Hadley circulation and large-scale motions associated with…

ao-sci · Physics 2016-08-30 Masaki Satoh