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Functional connectivity (FC) derived from resting-state fMRI plays a critical role in personalized predictions such as age and cognitive performance. However, applying foundation models(FM) to fMRI data remains challenging due to its high…

Neurons and Cognition · Quantitative Biology 2025-08-26 Yanwen Wang , Xinglin Zhao , Yijin Song , Xiaobo Liu , Yanrong Hao , Rui Cao , Xin Wen

This article presents a new high-order accurate algorithm for finding a particular solution to a linear, constant-coefficient partial differential equation (PDE) by means of a convolution of the volumetric source function with the Green's…

Numerical Analysis · Mathematics 2022-10-20 Thomas G. Anderson , Hai Zhu , Shravan Veerapaneni

This paper proposes a projection-based implicit modeling method (PIMM) for functionally graded lattice optimization, which does not require any homogenization techniques. In this method, a parametric projection function is proposed to link…

Computational Physics · Physics 2020-08-18 Hao Deng , Albert C. To

Interactive graph-based segmentation methods partition an image into foreground and background regions with the aid of user inputs. However, existing approaches often suffer from high computational costs, sensitivity to user interactions,…

Computer Vision and Pattern Recognition · Computer Science 2026-01-21 Kaustubh Shivshankar Shejole , Gaurav Mishra

The Fast Fourier Transform (FFT) is widely used in applications such as MRI, CT, and interferometry; however, because of its dependence on uniformly sampled data, it requires the use of gridding techniques for practical implementation. The…

Numerical Analysis · Mathematics 2025-12-22 Federico Achini , Paola Causin , Sara Vanini , Ke Chen , Simone Scacchi

In this paper, we introduce fastHDMI, a Python package designed for efficient variable screening in high-dimensional datasets, particularly neuroimaging data. This work pioneers the application of three mutual information estimation methods…

Machine Learning · Statistics 2024-10-15 Kai Yang , Masoud Asgharian , Nikhil Bhagwat , Jean-Baptiste Poline , Celia M. T. Greenwood

The design of novel functional materials in silico is severely hampered by the lack of robust and computationally efficient methods for describing both molecular absorbance and screening on substrates. Here we employ our hybrid…

Mesoscale and Nanoscale Physics · Physics 2019-10-15 Duncan John Mowbray , Vito Despoja

Polarization light microscopes are powerful tools for probing molecular order and orientation in birefringent materials. While a multitude of polarization light microscopy techniques are often used to access steady-state properties of…

Parameter-efficient fine-tuning (PEFT) is an effective methodology to unleash the potential of large foundation models in novel scenarios with limited training data. In the computer vision community, PEFT has shown effectiveness in image…

Computer Vision and Pattern Recognition · Computer Science 2024-03-29 Zelin Peng , Zhengqin Xu , Zhilin Zeng , Lingxi Xie , Qi Tian , Wei Shen

The goal of Feature Selection - comprising filter, wrapper, and embedded approaches - is to find the optimal feature subset for designated downstream tasks. Nevertheless, current feature selection methods are limited by: 1) the selection…

Machine Learning · Computer Science 2023-09-18 Meng Xiao , Dongjie Wang , Min Wu , Pengfei Wang , Yuanchun Zhou , Yanjie Fu

Modern approaches to the search of Relative and Global minima of potential energy function of Biomacromolecular structures include techniques of combinatorial optimization like the study of Steiner Points and Steiner Trees. These methods…

Mathematical Physics · Physics 2007-05-23 R. P. Mondaini

Background: In the Nearest-Neighbor Thermodynamic Model, a standard approach for RNA secondary structure prediction, the energy of the multiloops is modeled using a linear entropic penalty governed by three branching parameters. Although…

Biomolecules · Quantitative Biology 2025-10-15 Svetlana Poznanović , Owen Cardwell , Christine Heitsch

In this work, we propose using a unified representation, termed Factorized Features, for low-level vision tasks, where we test on Single Image Super-Resolution (SISR) and \textbf{Image Compression}. Motivated by the shared principles…

Image and Video Processing · Electrical Eng. & Systems 2025-11-04 Yang-Che Sun , Cheng Yu Yeo , Ernie Chu , Jun-Cheng Chen , Yu-Lun Liu

Structure-Based molecule optimization (SBMO) aims to optimize molecules with both continuous coordinates and discrete types against protein targets. A promising direction is to exert gradient guidance on generative models given its…

Biomolecules · Quantitative Biology 2025-06-06 Keyue Qiu , Yuxuan Song , Jie Yu , Hongbo Ma , Ziyao Cao , Zhilong Zhang , Yushuai Wu , Mingyue Zheng , Hao Zhou , Wei-Ying Ma

We propose to enhance the performance of localized plasmon structured illumination microscopy (LP-SIM) via intensity correlations. LP-SIM uses sub-wavelength illumination patterns to encode high spatial frequency information. It can enhance…

Current analysis of additive manufactured niobium-based copper alloys relies on hand annotation due to varying contrast, noise, and image artifacts present in micrographs, slowing iteration speed in alloy development. We present a filtering…

Computer Vision and Pattern Recognition · Computer Science 2026-02-10 Kyle Williams , Andrew Seltzman

We demonstrate the potential of perylene bisimide (PBI) for label-free sensing of organic molecules by investigating the change in electronic properties of five symmetric and asymmetric PBI derivatives, which share a common backbone, but…

Mesoscale and Nanoscale Physics · Physics 2015-01-22 Qusiy Al-Galiby , Iain Grace , Hatef Sadeghi , Colin J. Lambert

We propose a novel physical layer security scheme that exploits an optimization method as a one-way function. The proposed scheme builds on nonsquare differential multiple-input multiple-output (MIMO), which is capable of noncoherent…

Signal Processing · Electrical Eng. & Systems 2023-05-22 Yuma Katsuki , Giuseppe Thadeu Freitas de Abreu , Koji Ishibashi , Naoki Ishikawa

Localization microscopy often relies on detailed models of point spread functions. For applications such as deconvolution or PSF engineering, accurate models for light propagation in imaging systems with high numerical aperture are…

In intensity-modulated radiation therapy, optimal intensity distributions of incoming beams are decomposed into linear combinations of leaf openings of a multileaf collimator (segments). In order to avoid inefficient dose delivery, the…

Medical Physics · Physics 2010-09-29 Antje Kiesel , Tobias Gauer