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Modern convolutional neural networks (CNNs)-based face detectors have achieved tremendous strides due to large annotated datasets. However, misaligned results with high detection confidence but low localization accuracy restrict the further…

Computer Vision and Pattern Recognition · Computer Science 2022-07-25 Shi Luo , Xiongfei Li , Xiaoli Zhang

Deepfake detection has become a fundamental component of modern media forensics. Despite significant progress in detection accuracy, most existing methods remain computationally intensive and parameter-heavy, limiting their deployment on…

Computer Vision and Pattern Recognition · Computer Science 2026-04-13 Xiangyu Li , Yujing Sun , Yuhang Zheng , Yuexin Ma , Kwok-Yan Lam

Deep learning methods have been considered promising for accelerating molecular screening in drug discovery and material design. Due to the limited availability of labelled data, various self-supervised molecular pre-training methods have…

Machine Learning · Computer Science 2024-07-17 Yuyan Ni , Shikun Feng , Xin Hong , Yuancheng Sun , Wei-Ying Ma , Zhi-Ming Ma , Qiwei Ye , Yanyan Lan

Virtual screening (VS) is a critical component of modern drug discovery, yet most existing methods--whether physics-based or deep learning-based--are developed around holo protein structures with known ligand-bound pockets. Consequently,…

Machine Learning · Computer Science 2025-10-31 Wenyu Zhu , Jianhui Wang , Bowen Gao , Yinjun Jia , Haichuan Tan , Ya-Qin Zhang , Wei-Ying Ma , Yanyan Lan

In supervised learning, understanding an input's proximity to the training data can help a model decide whether it has sufficient evidence for reaching a reliable prediction. While powerful probabilistic models such as Gaussian Processes…

Machine Learning · Computer Science 2024-06-19 Ifigeneia Apostolopoulou , Benjamin Eysenbach , Frank Nielsen , Artur Dubrawski

We propose a systematic framework to conduct design-technology pathfinding for PPAC in advanced nodes. Our goal is to provide configurable, scalable generation of process design kit (PDK) and standard-cell library, spanning key scaling…

Hardware Architecture · Computer Science 2023-04-27 Suhyeong Choi , Jinwook Jung , Andrew B. Kahng , Minsoo Kim , Chul-Hong Park , Bodhisatta Pramanik , Dooseok Yoon

Machine learning shows great potential in virtual screening for drug discovery. Current efforts on accelerating docking-based virtual screening do not consider using existing data of other previously developed targets. To make use of the…

Machine Learning · Computer Science 2021-12-14 Zijing Liu , Xianbin Ye , Xiaomin Fang , Fan Wang , Hua Wu , Haifeng Wang

Automated polyp segmentation is critical for early colorectal cancer detection and its prevention, yet remains challenging due to weak boundaries, large appearance variations, and limited annotated data. Lightweight segmentation models such…

Computer Vision and Pattern Recognition · Computer Science 2026-04-21 Shivanshu Agnihotri , Snehashis Majhi , Deepak Ranjan Nayak

Motivation: Prediction of ligands for proteins of known 3D structure is important to understand structure-function relationship, predict molecular function, or design new drugs. Results: We explore a new approach for ligand prediction in…

Machine Learning · Statistics 2009-07-10 Brice Hoffmann , Mikhail Zaslavskiy , Jean-Philippe Vert , Véronique Stoven

Deep learning's rise since the early 2010s has transformed fields like computer vision and natural language processing and strongly influenced biomedical research. For drug discovery specifically, a key inflection - akin to vision's…

Machine Learning · Computer Science 2025-11-19 Antonia Ebner , Christoph Bartmann , Sonja Topf , Sohvi Luukkonen , Johannes Schimunek , Günter Klambauer

Finding drug-like compounds with high bioactivity is essential for drug discovery, but the task is complicated by the high cost of chemical synthesis and validation. With their outstanding performance in de novo drug design, deep generative…

Quantitative Methods · Quantitative Biology 2023-01-03 Yibo Li , Jianfeng Pei , Luhua Lai

Generating molecules with high binding affinities to target proteins (a.k.a. structure-based drug design) is a fundamental and challenging task in drug discovery. Recently, deep generative models have achieved remarkable success in…

Biomolecules · Quantitative Biology 2023-05-24 Zaixi Zhang , Qi Liu

The arc of drug discovery entails a multiparameter optimization problem spanning vast length scales. They key parameters range from solubility (angstroms) to protein-ligand binding (nanometers) to in vivo toxicity (meters). Through feature…

The ultimate goal of drug design is to find novel compounds with desirable pharmacological properties. Designing molecules retaining particular scaffolds as the core structures of the molecules is one of the efficient ways to obtain…

Quantitative Methods · Quantitative Biology 2019-09-06 Yibo Li , Jianxing Hu , Yanxing Wang , Jielong Zhou , Liangren Zhang , Zhenming Liu

Model identification of battery dynamics is a central problem in energy research; many energy management systems and design processes rely on accurate battery models for efficiency optimization. The standard methodology for battery…

Machine Learning · Computer Science 2023-10-13 Gokhan Budan , Francesca Damiani , Can Kurtulus , N. Kemal Ure

In structure-based drug discovery, virtual screening using conventional molecular docking methods can be performed rapidly but suffers from limitations in prediction accuracy. Recently, Boltz-2 was proposed, achieving extremely high…

Biomolecules · Quantitative Biology 2025-08-26 Kairi Furui , Masahito Ohue

Structure-based drug discovery, encompassing the tasks of protein-ligand docking and pocket-aware 3D drug design, represents a core challenge in drug discovery. However, no existing work can deal with both tasks to effectively leverage the…

Computational Engineering, Finance, and Science · Computer Science 2025-02-10 Xiuyuan Hu , Guoqing Liu , Can Chen , Yang Zhao , Hao Zhang , Xue Liu

Protein-ligand docking is an in silico tool used to screen potential drug compounds for their ability to bind to a given protein receptor within a drug-discovery campaign. Experimental drug screening is expensive and time consuming, and it…

Recently, prompt tuning methods for pre-trained models have demonstrated promising performance in Class Incremental Learning (CIL). These methods typically involve learning task-specific prompts and predicting the task ID to select the…

Computer Vision and Pattern Recognition · Computer Science 2024-12-17 Qiwei Li , Jiahuan Zhou

Molecular conformation generation (MCG) is a fundamental and important problem in drug discovery. Many traditional methods have been developed to solve the MCG problem, such as systematic searching, model-building, random searching,…

Computational Engineering, Finance, and Science · Computer Science 2023-03-28 Gengmo Zhou , Zhifeng Gao , Zhewei Wei , Hang Zheng , Guolin Ke