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The suffix array is a fundamental data structure for many applications that involve string searching and data compression. Designing time/space-efficient suffix array construction algorithms has attracted significant attention and…
We consider a classical k-center problem in trees. Let T be a tree of n vertices and every vertex has a nonnegative weight. The problem is to find k centers on the edges of T such that the maximum weighted distance from all vertices to…
We study a fundamental problem in Computational Geometry, the planar two-center problem. In this problem, the input is a set $S$ of $n$ points in the plane and the goal is to find two smallest congruent disks whose union contains all points…
Recently Kubica et al. (Inf. Process. Let., 2013) and Kim et al. (submitted to Theor. Comp. Sci.) introduced order-preserving pattern matching. In this problem we are looking for consecutive substrings of the text that have the same "shape"…
We introduce a new framework for solving an important class of computational problems involving finite permutation groups, which includes calculating set stabilisers, intersections of subgroups, and isomorphisms of combinatorial structures.…
This paper presents a new distributed approach for generating all prime numbers in a given interval of integers. From Eratosthenes, who elaborated the first prime sieve (more than 2000 years ago), to the current generation of parallel…
Given a multiset $S$ of $n$ positive integers and a target integer $t$, the Subset Sum problem asks to determine whether there exists a subset of $S$ that sums up to $t$. The current best deterministic algorithm, by Koiliaris and Xu…
The all-pairs shortest path problem is the first non-artificial problem for which it was shown that adding crossover can significantly speed up a mutation-only evolutionary algorithm. Recently, the analysis of this algorithm was refined and…
The original Leapfrogging Samplesort operates on a sorted sample of size $s$ and an unsorted part of size $s+1$. We generalize this to a sorted sample of size $s$ and an unsorted part of size $(2^k-1)(s+1)$, where $k = O(1)$. We present a…
The problem called "String reconstruction from substrings" is a mathematical model of sequencing by hybridization that plays an important role in DNA sequencing. In this problem, we are given a blackbox oracle holding an unknown string…
We present a new algorithm for recovering paths from their third-order signature tensors, an inverse problem in rough analysis. Our algorithm provides the exact solution to this learning problem and improves upon current approaches by an…
We study the online variant of the Min-Sum Set Cover (MSSC) problem, a generalization of the well-known list update problem. In the MSSC problem, an algorithm has to maintain the time-varying permutation of the list of $n$ elements, and…
Counting permutations of $[n]$ by the number of records, i.e. left-to-right maxima, is a classic problem in combinatorial enumeration. In the first volume of ``The Art of Computer Programming", Donald Knuth demonstrated its relevance for…
Squares (fragments of the form $xx$, for some string $x$) are arguably the most natural type of repetition in strings. The basic algorithmic question concerning squares is to check if a given string of length $n$ is square-free, that is,…
Let $A$ be an $n\times n$ random matrix whose entries are i.i.d. with mean $0$ and variance $1$. We present a deterministic polynomial time algorithm which, with probability at least $1-2\exp(-\Omega(\epsilon n))$ in the choice of $A$,…
We introduce a new framework for solving an important class of computational problems involving finite permutation groups, which includes calculating set stabilisers, intersections of subgroups, and isomorphisms of combinatorial structures.…
We consider the selection problem on a completely connected network of $n$ processors with no shared memory. Each processor initially holds a given numeric item of $b$ bits allowed to send a message of $\max ( b, \lg n )$ bits to another…
Graph transformation is the rule-based modification of graphs, and is a discipline dating back to the 1970s. The declarative nature of graph rewriting rules comes at a cost. In general, to match the left-hand graph of a fixed rule within a…
Drawing on a problem posed by Hertzsprung in 1887, we say that a given permutation $\pi\in\mathcal{S}_n$ contains the Hertzsprung pattern $\sigma\in\mathcal{S}_k$ if there is factor $\pi(d+1)\pi(d+2)\cdots\pi(d+k)$ of $\pi$ such that…
Despite the recent progress in genome sequencing and assembly, many of the currently available assembled genomes come in a draft form. Such draft genomes consist of a large number of genomic fragments (scaffolds), whose order and/or…